Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D20
         (224 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   1.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   3.2  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    19   5.7  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    19   9.9  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    19   9.9  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    19   9.9  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 1.4
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 64  HRERRNPRSAVKKRSNAGVRLQCVTLRALATVRRKSD 174
           +  R+     +KK    G+R +CV       V+RK +
Sbjct: 234 YMRRKCQECRLKKCLTVGMRPECVVPEYQCAVKRKEE 270


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 3.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 115 GVRLQCVTLRALATVR 162
           G+RL C  + A AT R
Sbjct: 386 GIRLPCREVEAAATAR 401


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 19.4 bits (38), Expect = 5.7
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +1

Query: 64  HRERRNPRSAVKKRSNAGVRLQCVTLRALATVRRK 168
           +  R+     +KK    G+R +C+       V+RK
Sbjct: 31  YMRRKCQECRLKKCLTVGMRPECMVPEYQCAVKRK 65


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 18.6 bits (36), Expect = 9.9
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 64  HRERRNPRSAVK 99
           H ER  PRS  K
Sbjct: 260 HNERSTPRSHAK 271


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 18.6 bits (36), Expect = 9.9
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 64  HRERRNPRSAVK 99
           H ER  PRS  K
Sbjct: 260 HNERSTPRSHAK 271


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 18.6 bits (36), Expect = 9.9
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 64  HRERRNPRSAVK 99
           H ER  PRS  K
Sbjct: 260 HNERSTPRSHAK 271


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,903
Number of Sequences: 438
Number of extensions: 367
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3533460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)