Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D19
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    27   2.9  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    27   2.9  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   3.9  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    26   3.9  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    26   3.9  
SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces pom...    26   5.1  
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|...    26   5.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   6.8  
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    25   6.8  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    25   6.8  
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   6.8  
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    25   9.0  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.0  

>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 422 LMVITKNIWNFLKVNTVNYSNMLTRSVF 505
           +M  T  I N  KVN VN  N+L+  VF
Sbjct: 170 MMQATTQIQNLYKVNNVNPLNLLSAPVF 197


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 286 IAKQLIKAAKDAGASCVKFQKTCLKEKFTKKYLERSYDN 402
           + + +I   KD G   V   KT +++   K+YLER  DN
Sbjct: 690 LVQYVINNVKDRGIPLVSDVKTAIEKLLEKEYLERE-DN 727


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1098

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 476  YSNMLTRSVFYLLPLLWTWYLSIF 547
            Y N+L + +FYLL  LW   L  F
Sbjct: 999  YVNLLPKPLFYLLSRLWFGLLETF 1022


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 316 DAGASCVKFQKTCLKEKFTKKYLERSYDNHNS 411
           D    C K+ + C+  +F +K     Y+N NS
Sbjct: 28  DVCFECQKYNENCVYRQFYRKIKRLKYNNDNS 59


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 334 VKFQKTCLKEKFTKKYLERSYDNHNSWGKTYGDHKKHLEFS-ESQYREL 477
           +  Q   L  KF K  +  SYD  N WG+   + +  L F   S+ R+L
Sbjct: 748 IDLQLPVLLSKFMKPTIFDSYDFFNHWGQMGVEREAQLTFGLNSKDRKL 796


>SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 274

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +1

Query: 172 VVVLNMLEVKITEDVKVGGNNPCFIIAEVG*NHQGDIGIAKQLIKAAKD 318
           V+ L +L++ +TE V VG +   +++A+   N    IGI+ +     KD
Sbjct: 99  VIRLGILKINLTEYVYVGQDTRKYLLADSKINATIRIGISLKQTSGNKD 147


>SPCC11E10.04 |||mitochondrial ATPase expression protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 443

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +1

Query: 343 QKTCLKEKFTKKYLERSYDNHNSWGKTYGDHKKHLEFSESQYRELFKYA 489
           +K C  E +TK++L  S +  N+  K     KKHL+  E Q  +L +YA
Sbjct: 371 EKVC--ESWTKQFLG-SLEKQNNEVK-----KKHLQLLEKQISKLMRYA 411


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 20/61 (32%), Positives = 27/61 (44%)
 Frame = -2

Query: 299 SCFAIPISP*WFHPTSAIIKHGLLPPTFTSSVILTSSIFKTTTSVP*KQTNENRVPVQAG 120
           S  + PI+P    PTS       +PPT TSS    S+   TT++     T    +P   G
Sbjct: 128 SSLSTPITP-TVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTST---SCTTSTSIPPTGG 183

Query: 119 S 117
           S
Sbjct: 184 S 184



 Score = 25.4 bits (53), Expect = 6.8
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -2

Query: 299 SCFAIPISP*WFHPTSAIIKHGLLPPTFTSSVILTSSIFKTTTS 168
           S  + PI+P    PTS       +PPT TSS    SS   TT++
Sbjct: 185 SSLSTPITP-TVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST 227



 Score = 25.4 bits (53), Expect = 6.8
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -2

Query: 299 SCFAIPISP*WFHPTSAIIKHGLLPPTFTSSVILTSSIFKTTTS 168
           S  + PI+P    PTS       +PPT TSS    SS   TT++
Sbjct: 241 SSLSTPITP-TVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST 283


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
            Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 334  VKFQKTCLKEKFTKKYLER 390
            V FQ   LK+K+T++YLE+
Sbjct: 1127 VSFQFDLLKKKYTQEYLEK 1145


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 430 HHKFYPKNCDYHKSALNTF 374
           H + YPKNC + +S L  F
Sbjct: 235 HLREYPKNCAFSRSVLEIF 253


>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 286

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 152 TNENRVPVQAGSLGNKLSLRNNRFIDLP 69
           +N + + V + SL ++LSLRNN  I +P
Sbjct: 52  SNNSNLAVTSRSLRHRLSLRNNTPIFMP 79


>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = -2

Query: 221 TFTSSVILTSSIFKTTTSVP*KQTNENRVPVQAGSLGNKLS 99
           +F SS++LT+S   ++TSV    ++++     A S+G  +S
Sbjct: 478 SFGSSLVLTASASPSSTSVDGSSSSDSSEASGAASVGVSIS 518


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 305 FISCFAIPISP*WF 264
           FI CF +PIS  WF
Sbjct: 420 FIGCFLLPISMFWF 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,686,951
Number of Sequences: 5004
Number of extensions: 56107
Number of successful extensions: 145
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)