Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D17
         (463 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    64   5e-13
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    20   9.7  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 64.5 bits (150), Expect = 5e-13
 Identities = 33/91 (36%), Positives = 57/91 (62%), Gaps = 4/91 (4%)
 Frame = +3

Query: 189 FHEMELDDRILKAISQLAWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFTIPVIQK 368
           F    L   +L+ + +  + +PT IQ+ AIP++L G+D++  A+TGSGKTAAF +P+I  
Sbjct: 160 FETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQTGSGKTAAFMLPIIHN 219

Query: 369 ILHSKH--TSTHQCIK--ALPLSPSKELCGQ 449
           +L  K+   + + C +   + +SP++EL  Q
Sbjct: 220 LLSDKNPPNTENNCAQPVVVIMSPTRELAIQ 250


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +2

Query: 29  DGNCLKRKVF 58
           DGNC++R +F
Sbjct: 126 DGNCIERGLF 135


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,747
Number of Sequences: 336
Number of extensions: 2300
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10616413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)