Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_D17
(463 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 82 5e-17
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 81 1e-16
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 72 4e-14
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 66 3e-12
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 65 6e-12
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 64 8e-12
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 64 1e-11
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 64 1e-11
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 62 3e-11
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 62 5e-11
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 60 2e-10
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 59 3e-10
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 57 2e-09
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 56 2e-09
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 55 6e-09
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 55 6e-09
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 54 8e-09
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 51 1e-07
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 51 1e-07
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 50 2e-07
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 47 2e-06
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 40 2e-04
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 39 3e-04
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 30 0.15
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 0.60
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 28 0.80
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 27 1.1
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 27 1.4
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 27 1.8
SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar... 26 3.2
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip... 25 4.3
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 25 5.6
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo... 25 7.4
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 7.4
SPAC23C4.07 |tht2|mug22|meiotically upregulated gene Mug22|Schiz... 25 7.4
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 24 9.8
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ... 24 9.8
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc... 24 9.8
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa... 24 9.8
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 81.8 bits (193), Expect = 5e-17
Identities = 46/91 (50%), Positives = 59/91 (64%)
Frame = +3
Query: 189 FHEMELDDRILKAISQLAWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFTIPVIQK 368
F M L+ +L+AI + + PT IQ IPLLLEG+DV+ ARTGSGKTAAF IP+I+
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIE- 129
Query: 369 ILHSKHTSTHQCIKALPLSPSKELCGQTDSV 461
H K T + +AL LSP++EL QT V
Sbjct: 130 --HLKSTLANSNTRALILSPNRELALQTVKV 158
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 80.6 bits (190), Expect = 1e-16
Identities = 42/98 (42%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
Frame = +3
Query: 171 EEKKVMFHEMELDDRILKAISQLAWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFT 350
E + F + LD R+ +AI + + +PT +Q IPL LEGKD++ +ARTGSGKTAA+
Sbjct: 10 ESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYL 69
Query: 351 IPVIQKILHSKHTSTHQ-CIKALPLSPSKELCGQTDSV 461
IP+++ +L K +Q I AL L P++EL Q +V
Sbjct: 70 IPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 72.1 bits (169), Expect = 4e-14
Identities = 41/92 (44%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Frame = +3
Query: 189 FHEMELDDRILKAISQLAWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFTIPVIQK 368
F M L ILK +S L + PT IQ+ IPL L GKD++ A TGSGKTAAF +P++++
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320
Query: 369 ILH-SKHTSTHQCIKALPLSPSKELCGQTDSV 461
+L+ K T + L L P++EL Q SV
Sbjct: 321 LLYRPKKVPT---TRVLILCPTRELAMQCHSV 349
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 65.7 bits (153), Expect = 3e-12
Identities = 36/91 (39%), Positives = 53/91 (58%)
Frame = +3
Query: 189 FHEMELDDRILKAISQLAWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFTIPVIQK 368
F + L +L I + + P+ IQE +IP+ L G+D+L RA+ G+GKTAAF IP ++K
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 369 ILHSKHTSTHQCIKALPLSPSKELCGQTDSV 461
+ K I+ L L P++EL QT V
Sbjct: 106 VDTKKSK-----IQTLILVPTRELALQTSQV 131
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 64.9 bits (151), Expect = 6e-12
Identities = 38/91 (41%), Positives = 56/91 (61%)
Frame = +3
Query: 189 FHEMELDDRILKAISQLAWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFTIPVIQK 368
F +M L +L+ I + P+ IQ+ AI +L +DVL +A++G+GKTA F+I V+QK
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQK 80
Query: 369 ILHSKHTSTHQCIKALPLSPSKELCGQTDSV 461
I TS QC +AL L+P++EL Q V
Sbjct: 81 I----DTSLKQC-QALILAPTRELAQQIQKV 106
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 64.5 bits (150), Expect = 8e-12
Identities = 35/87 (40%), Positives = 54/87 (62%)
Frame = +3
Query: 189 FHEMELDDRILKAISQLAWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFTIPVIQK 368
F +++L + I KAI ++ + T IQ+ +IP LL G+DVL A+TGSGKT AF IP I+
Sbjct: 91 FSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIE- 149
Query: 369 ILHSKHTSTHQCIKALPLSPSKELCGQ 449
+L++ + +SP++EL Q
Sbjct: 150 MLYALKFKPRNGTGVIIISPTRELALQ 176
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 64.1 bits (149), Expect = 1e-11
Identities = 35/87 (40%), Positives = 56/87 (64%)
Frame = +3
Query: 189 FHEMELDDRILKAISQLAWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFTIPVIQK 368
F E+ + D + +A +L + PT IQ+ AIP++L +DV+ A+TGSGKTAAF +PVIQ+
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 369 ILHSKHTSTHQCIKALPLSPSKELCGQ 449
+ ++ A+ L+P++EL Q
Sbjct: 108 LWNNPSP-----FFAVVLAPTRELAYQ 129
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 63.7 bits (148), Expect = 1e-11
Identities = 36/90 (40%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Frame = +3
Query: 189 FHEMELDDRILKAISQLAWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFTIPV--- 359
+ E L +LK + ++ + EP+ IQ AIP+LL+ KD++ A TGSGKTAAF IP+
Sbjct: 251 WEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIA 310
Query: 360 IQKILHSKHTSTHQCIKALPLSPSKELCGQ 449
I K+ ++ H A+ L+P++EL Q
Sbjct: 311 ISKLPPLTESNMHLGPYAVVLAPTRELAQQ 340
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 62.5 bits (145), Expect = 3e-11
Identities = 39/95 (41%), Positives = 57/95 (60%)
Frame = +3
Query: 171 EEKKVMFHEMELDDRILKAISQLAWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFT 350
E + F ++ + ++ + LA EPT IQE I +LEG++ + A+TGSGKTAAF
Sbjct: 3 EHTRKSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFA 62
Query: 351 IPVIQKILHSKHTSTHQCIKALPLSPSKELCGQTD 455
+P+I+K SK S I AL L+P++EL Q D
Sbjct: 63 LPIIEK--WSKDPSG---IFALILTPTRELAIQID 92
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 61.7 bits (143), Expect = 5e-11
Identities = 35/88 (39%), Positives = 51/88 (57%)
Frame = +3
Query: 189 FHEMELDDRILKAISQLAWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFTIPVIQK 368
F E+ L A+ + T IQ+ IP L+G+D+L A+TGSGKT AF +P+I+
Sbjct: 41 FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN 100
Query: 369 ILHSKHTSTHQCIKALPLSPSKELCGQT 452
+ K TS + AL +SP++EL QT
Sbjct: 101 LYRKKWTSL-DGLGALVISPTRELAIQT 127
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 60.1 bits (139), Expect = 2e-10
Identities = 30/82 (36%), Positives = 49/82 (59%)
Frame = +3
Query: 204 LDDRILKAISQLAWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFTIPVIQKILHSK 383
L + + I+ L + +PT IQ AIP + G+DV+ A+TGSGKT AF +P+ + I +
Sbjct: 425 LSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQR 484
Query: 384 HTSTHQCIKALPLSPSKELCGQ 449
T + A+ ++P++EL Q
Sbjct: 485 PLKTGEGPIAIIMTPTRELAVQ 506
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 59.3 bits (137), Expect = 3e-10
Identities = 33/91 (36%), Positives = 55/91 (60%)
Frame = +3
Query: 189 FHEMELDDRILKAISQLAWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFTIPVIQK 368
F EM L + +L+ I + P+ +Q AI + +G+DV+ +A++G+GKTA F+I ++Q
Sbjct: 23 FEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQS 82
Query: 369 ILHSKHTSTHQCIKALPLSPSKELCGQTDSV 461
I S + +AL LSP++EL Q +V
Sbjct: 83 IDLSVRDT-----QALILSPTRELAVQIQNV 108
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 56.8 bits (131), Expect = 2e-09
Identities = 34/101 (33%), Positives = 60/101 (59%), Gaps = 6/101 (5%)
Frame = +3
Query: 177 KKVMFHEMELDDRILKAIS-QLAWPEPTLIQETAIPLLL--EGKDVLMRARTGSGKTAAF 347
K F ++LD ++ ++ ++ PT IQ +P LL + KD + A+TGSGKT A+
Sbjct: 136 KTTNFAGVQLDTQLADHLNNKMNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAY 195
Query: 348 TIPVIQKILH---SKHTSTHQCIKALPLSPSKELCGQTDSV 461
+P++Q+++ + HT T I A+ ++P++ELC Q +V
Sbjct: 196 LLPIVQRLIRLPKNLHTRT-SGIYAVIMAPTRELCQQIYNV 235
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 56.4 bits (130), Expect = 2e-09
Identities = 29/91 (31%), Positives = 53/91 (58%)
Frame = +3
Query: 189 FHEMELDDRILKAISQLAWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFTIPVIQK 368
F + +D + A++ + + T +Q AIPL L+ KD+++ A TGSGKT A+ +P K
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 369 ILHSKHTSTHQCIKALPLSPSKELCGQTDSV 461
+ ++ + + AL ++P++EL Q +V
Sbjct: 63 V--TRRDTDETGLGALIVAPTRELATQIFNV 91
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 54.8 bits (126), Expect = 6e-09
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 2/89 (2%)
Frame = +3
Query: 189 FHEMELDDRILKAISQLAWPEPTLIQETAIPLLLEG--KDVLMRARTGSGKTAAFTIPVI 362
F E+EL +LK I + + +P+ IQE A+PLLL ++++ ++++G+GKTAAF + ++
Sbjct: 116 FEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTML 175
Query: 363 QKILHSKHTSTHQCIKALPLSPSKELCGQ 449
++ S +A+ L+PS+EL Q
Sbjct: 176 SRVDASVPKP-----QAICLAPSRELARQ 199
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 54.8 bits (126), Expect = 6e-09
Identities = 32/90 (35%), Positives = 51/90 (56%)
Frame = +3
Query: 183 VMFHEMELDDRILKAISQLAWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFTIPVI 362
+ F E+++ ++ + + + EPT IQ P LL G+DV+ A TGSGKT AF IP +
Sbjct: 167 LQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPAL 224
Query: 363 QKILHSKHTSTHQCIKALPLSPSKELCGQT 452
Q + + + + L +SP++EL QT
Sbjct: 225 QYL--NGLSDNKSVPRVLVVSPTRELAIQT 252
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 54.4 bits (125), Expect = 8e-09
Identities = 30/87 (34%), Positives = 47/87 (54%)
Frame = +3
Query: 189 FHEMELDDRILKAISQLAWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFTIPVIQK 368
F E + +LK + QL + PT IQ+ A P+ + G+D++ + TGSGKT ++ +P I
Sbjct: 124 FEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVH 183
Query: 369 ILHSKHTSTHQCIKALPLSPSKELCGQ 449
I S L L+P++EL Q
Sbjct: 184 INAQPLLSPGDGPIVLVLAPTRELAVQ 210
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 50.8 bits (116), Expect = 1e-07
Identities = 28/82 (34%), Positives = 47/82 (57%)
Frame = +3
Query: 204 LDDRILKAISQLAWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFTIPVIQKILHSK 383
L +L ++S+ + +P IQ IP G D++ +A TGSGKT AF IP+++ H
Sbjct: 129 LSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILE---HCL 185
Query: 384 HTSTHQCIKALPLSPSKELCGQ 449
+ ++AL ++P++EL Q
Sbjct: 186 RNVDAKYVQALVVAPTRELAHQ 207
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 50.8 bits (116), Expect = 1e-07
Identities = 21/58 (36%), Positives = 37/58 (63%)
Frame = +3
Query: 189 FHEMELDDRILKAISQLAWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFTIPVI 362
F L+ +L+ I + +PT +Q+ +IP++ G+D++ A+TGSGKTA F P++
Sbjct: 171 FTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPIL 228
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 49.6 bits (113), Expect = 2e-07
Identities = 22/61 (36%), Positives = 37/61 (60%)
Frame = +3
Query: 189 FHEMELDDRILKAISQLAWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFTIPVIQK 368
F + L +L+AI+ + P+ +Q+ IP + G DVL +A++G GKTA F + +Q+
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQ 112
Query: 369 I 371
I
Sbjct: 113 I 113
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 46.8 bits (106), Expect = 2e-06
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +3
Query: 249 EPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFTIPVIQKI-LHSKHTSTHQCIKALPLS 425
E T IQ AIP + +D+L A TGSGKT A+ P++QK+ LH +A+ ++
Sbjct: 68 ECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLH-----VPGGYRAIIVA 122
Query: 426 PSKELCGQ 449
P++ELC Q
Sbjct: 123 PTRELCEQ 130
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 39.5 bits (88), Expect = 2e-04
Identities = 23/94 (24%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Frame = +3
Query: 174 EKKVMFHEM-ELDDRILKAISQLAWPEPTLIQETAIPLLLEGKD-VLMRARTGSGKTAAF 347
++ +F E+ L ++S+ + + T +Q+ + + ++ +++A+TG+GKT AF
Sbjct: 34 QQPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAF 93
Query: 348 TIPVIQKILHSKHTSTHQCIKALPLSPSKELCGQ 449
+ + +L K I ++ LSP++EL Q
Sbjct: 94 LLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQ 127
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 39.1 bits (87), Expect = 3e-04
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Frame = +3
Query: 183 VMFHEMELDDRILKAISQLAWPEPTLIQETAIPLLLE----------GKDVLMRARTGSG 332
V F + + ++++ + + +Q +PLLL+ G DV + A TGSG
Sbjct: 126 VEFSSLNISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSG 185
Query: 333 KTAAFTIPVIQKILHSKHTSTHQCIKALPLSPSKELCGQ 449
KT ++ IP++Q + H T ++ + + P++EL Q
Sbjct: 186 KTLSYVIPIVQCLSH----RTVPRLRCVVIVPTRELTVQ 220
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 30.3 bits (65), Expect = 0.15
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 264 QETAIPLLLEGKDVLMRARTGSGKTAAFTIPVIQKILHSKHTS 392
Q AI L G V++ T SGK+ + IP++Q +L ++
Sbjct: 316 QADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSLLEDNQST 358
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 28.3 bits (60), Expect = 0.60
Identities = 17/72 (23%), Positives = 33/72 (45%)
Frame = +2
Query: 158 LINDGGKKGYVSRNGAGRSDTEGDIPTGMARANIDPRNSNTIAS*RQRCSHASQNWFR*N 337
L+ D +K ++S++ + D +GD I+P+ ++ + S R S S N
Sbjct: 622 LLQDNAEK-HISKSNLEKVDVKGDTSPNSVEQGIEPQAASVVGS--PRSSLVSNNSLEEG 678
Query: 338 CCFHNTSNTENI 373
N+ + E+I
Sbjct: 679 ALLKNSESLESI 690
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 27.9 bits (59), Expect = 0.80
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 264 QETAIPLLLEGKDVLMRARTGSGKTAAFTIPVI 362
Q AI L GKDV + TG GK+ + +P +
Sbjct: 524 QLEAINGTLSGKDVFILMPTGGGKSLCYQLPAV 556
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 27.5 bits (58), Expect = 1.1
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +3
Query: 264 QETAIPLLLEGKDVLMRARTGSGKTAAFTIPVIQKILHSKHTSTHQCIKALPLSPSKELC 443
Q TAI + + VL+ A T +GKT + Q + + + IK+L +EL
Sbjct: 130 QSTAIKCVERMESVLVSAHTSAGKTVIAEYAIAQALKNRQRVIYTSPIKSLSNQKYRELL 189
Query: 444 GQTDSV 461
+ V
Sbjct: 190 SEFGDV 195
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 27.1 bits (57), Expect = 1.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 324 GSGKTAAFTIPVIQKILHSKHTSTHQCI 407
G G T AFT ++Q+I S S +CI
Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCI 116
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 26.6 bits (56), Expect = 1.8
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = +3
Query: 264 QETAIPLLLEGKDVLMRARTGSGKTAAFTIPVIQKILHSKHTSTHQCIKALPLSPSKELC 443
Q +I + + VL+ A T +GKT V Q + + IKAL +EL
Sbjct: 203 QAVSIACIERQESVLVSAHTSAGKTVVAEYAVAQSLRDKQRVIYTSPIKALSNQKYRELL 262
Query: 444 GQTDSV 461
+ V
Sbjct: 263 AEFGDV 268
>SPBC354.02c |sec61||translocon alpha subunit
Sec61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 479
Score = 25.8 bits (54), Expect = 3.2
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 248 WPCQLGYRLQYPIVQLHFVKHNLFFLHRLLVLQFTGKY 135
+P +L Y PI+ + NLFF RLL +F+ +
Sbjct: 288 FPVKLLYTSNTPIMLQSALTSNLFFASRLLFNRFSSNF 325
>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
antiporter Sod22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 25.4 bits (53), Expect = 4.3
Identities = 8/39 (20%), Positives = 18/39 (46%)
Frame = -1
Query: 397 CVLVCFECNIFCITGIVKAAVLPEPVLARMRTSLPSRSN 281
C+++ +EC C+ G + + + + R L R +
Sbjct: 205 CIIILYECTFGCVLGAIIGVIARKMIKFSERRGLMDRES 243
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 25.0 bits (52), Expect = 5.6
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 342 AFTIPVIQKILHSKHTSTHQCIKALPLSPSKELCGQT 452
AFT P +LH +++ Q I P + S+ L G T
Sbjct: 109 AFTTPYETSVLHPENSYLTQFIADAPTTTSQRLKGLT 145
>SPAC1687.13c |csn5||COP9/signalosome complex subunit
Csn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 299
Score = 24.6 bits (51), Expect = 7.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 379 RSIQVHINVLKLYHYHPARNC 441
+S+ H NV+ YH HP C
Sbjct: 105 KSVYRHENVIGWYHSHPNYGC 125
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 24.6 bits (51), Expect = 7.4
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = -2
Query: 429 WVIMVKL*YIDVYLYASNVIFSVLLVL*KQQFYLNQFWLA*EHLCLQEAMVLL 271
W+++ + + Y + S +LVL + YL HLC+ + +LL
Sbjct: 660 WLLVFGAKFTESYFFLSLSFRDPILVLSTMKPYLCNITFLGSHLCIWQPKILL 712
>SPAC23C4.07 |tht2|mug22|meiotically upregulated gene
Mug22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 24.6 bits (51), Expect = 7.4
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -3
Query: 308 ENIFAFKKQWYCCFLDQCWLWPCQLGY-RLQYPIVQLHFV 192
E K++ C Q W + QLGY R Q + L FV
Sbjct: 127 ETTLKVAKEFQICDSSQEWFFQFQLGYHRKQMELQMLSFV 166
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 24.2 bits (50), Expect = 9.8
Identities = 8/21 (38%), Positives = 10/21 (47%)
Frame = +1
Query: 151 CKTNKRWRKKRLCFTKWSWTI 213
CKT K+W K C W +
Sbjct: 2141 CKTVKQWSLKERCSCSGEWVL 2161
>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 24.2 bits (50), Expect = 9.8
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -3
Query: 230 YRLQYPIVQLHFVKHNLFFLHRLLVLQFTGKYF 132
YRLQ IV++ +KH++ + ++ + YF
Sbjct: 393 YRLQSVIVEIERMKHHVLVIGHRVITRIIIAYF 425
>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 24.2 bits (50), Expect = 9.8
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +3
Query: 330 GKTAAFTIPVIQKILHSKHTSTHQCIKAL 416
G FT+P + HTSTH AL
Sbjct: 124 GPEQGFTLPGTTLVCGDSHTSTHGAFGAL 152
>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 24.2 bits (50), Expect = 9.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 207 DDRILKAISQLAWPEPTLIQ 266
D RILK + WPEP +I+
Sbjct: 217 DSRILKDSIKNNWPEPKIIR 236
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,938,799
Number of Sequences: 5004
Number of extensions: 37661
Number of successful extensions: 120
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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