Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D16
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1071 + 25824311-25824460,25824774-25824857,25825168-258252...    33   0.13 
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863...    29   1.6  
12_01_0904 + 8791474-8792261,8792935-8793037,8794009-8794055,879...    29   2.7  
11_01_0727 - 6010537-6010548,6011029-6011606,6011709-6011774,601...    27   6.3  
03_06_0338 + 33240111-33240860,33241248-33241536,33242494-33242621     27   6.3  
04_04_0654 + 26968899-26969034,26969613-26969671,26969677-26969784     27   8.4  
01_06_0999 + 33692480-33692725                                         27   8.4  

>12_02_1071 +
           25824311-25824460,25824774-25824857,25825168-25825246,
           25825334-25825428,25825940-25826067,25826160-25826393,
           25826509-25826683,25826716-25826748,25827292-25827375,
           25827929-25828169,25828275-25828453,25828800-25828873,
           25830800-25830950,25831178-25831252,25831748-25831778,
           25832107-25832339
          Length = 681

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = -1

Query: 147 GRRGGWGRACVSGSGILPP 91
           GR G WGR CV+ SG LPP
Sbjct: 607 GRDGDWGRVCVTVSGQLPP 625


>03_02_0455 -
           8630543-8630893,8630994-8631068,8631149-8631223,
           8631332-8631397,8631891-8631967,8632659-8633070
          Length = 351

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 44  PEIPTKTPR*LNPMGMGGRIPLPDTQAL-PHPPLRPILNGEF*SIRP 181
           P+ P   P    PMGM  RIP P      P PP  P+ NG   SI P
Sbjct: 277 PQAPPPPPPNA-PMGMPPRIPPPPVGGTQPPPPPPPLANGPPRSIPP 322


>12_01_0904 +
           8791474-8792261,8792935-8793037,8794009-8794055,
           8795180-8795717
          Length = 491

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 492 GSSKRNGVFKTALECALLGFSLGCDI 415
           G  K++ +FK  + C LLG S G +I
Sbjct: 300 GEKKQHTIFKMEIRCVLLGVSCGANI 325


>11_01_0727 -
           6010537-6010548,6011029-6011606,6011709-6011774,
           6011867-6011964,6013238-6013608
          Length = 374

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +2

Query: 86  GMGGRIPLPDTQALPHPPLRPILNGEF*SIRPG 184
           G  G+ P P   A PHPP  P  N     + PG
Sbjct: 302 GTYGQPPAPGNYAQPHPPTYPGSNQGAPGVNPG 334


>03_06_0338 + 33240111-33240860,33241248-33241536,33242494-33242621
          Length = 388

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +1

Query: 358 WSLRRTGHLPGTVALRS-YS-YIAAKGKP 438
           W++ R  H PG V LRS Y  Y++A  +P
Sbjct: 42  WTVERVPHSPGVVRLRSRYGRYLSASNEP 70


>04_04_0654 + 26968899-26969034,26969613-26969671,26969677-26969784
          Length = 100

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 108 CLTHRLSPTHLFARFSMENFEVSGR 182
           CL HR      F  F +ENF V GR
Sbjct: 64  CLFHRAPMLIFFVEFVIENFPVHGR 88


>01_06_0999 + 33692480-33692725
          Length = 81

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 147 GRRGGWGRACVSGSGI 100
           GRRGG GRA + G G+
Sbjct: 29  GRRGGGGRAYIGGGGV 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,003,106
Number of Sequences: 37544
Number of extensions: 323824
Number of successful extensions: 862
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)