Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D16
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81497-7|CAB04083.3|  652|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z75955-17|CAB00127.3|  652|Caenorhabditis elegans Hypothetical p...    27   7.6  
U52002-6|AAB37732.1|  142|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U97407-6|AAB52481.1|  751|Caenorhabditis elegans Tyrosinase prot...    24   8.1  
U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical p...    27   10.0 
U42439-9|AAM98033.1|  294|Caenorhabditis elegans Hypothetical pr...    27   10.0 
U42439-8|AAM98032.1|  431|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>Z81497-7|CAB04083.3|  652|Caenorhabditis elegans Hypothetical
           protein R07B7.2 protein.
          Length = 652

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 101 IPLPDTQALPHPPLRPILNGE 163
           +P PD Q+ P PP  P+ N E
Sbjct: 158 LPPPDQQSAPVPPSHPLQNSE 178


>Z75955-17|CAB00127.3|  652|Caenorhabditis elegans Hypothetical
           protein R07B7.2 protein.
          Length = 652

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 101 IPLPDTQALPHPPLRPILNGE 163
           +P PD Q+ P PP  P+ N E
Sbjct: 158 LPPPDQQSAPVPPSHPLQNSE 178


>U52002-6|AAB37732.1|  142|Caenorhabditis elegans Hypothetical
           protein F08B4.7 protein.
          Length = 142

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/41 (36%), Positives = 17/41 (41%)
 Frame = +2

Query: 29  PGVKRPEIPTKTPR*LNPMGMGGRIPLPDTQALPHPPLRPI 151
           PGV  P  P   P    PMGM G   +P     P    RP+
Sbjct: 102 PGVGFPGAPGMPPFPGGPMGMAGPPGMPPMMPRPPQQFRPM 142


>U97407-6|AAB52481.1|  751|Caenorhabditis elegans Tyrosinase protein
           4 protein.
          Length = 751

 Score = 24.2 bits (50), Expect(2) = 8.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 177 RILQNSPLRIGRRGGWGR 124
           ++ Q +P R   RGGWGR
Sbjct: 667 QVRQTNPSRQPPRGGWGR 684



 Score = 21.0 bits (42), Expect(2) = 8.1
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -1

Query: 147 GRRGGWGRACVSGSG 103
           G RGGWG     G G
Sbjct: 714 GGRGGWGGGGWGGGG 728


>U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical
           protein B0207.1 protein.
          Length = 564

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +2

Query: 101 IPLPDT-QALPHPPLRPILN 157
           +PLP T Q LPHPP+   LN
Sbjct: 163 LPLPQTFQPLPHPPVPQQLN 182


>U42439-9|AAM98033.1|  294|Caenorhabditis elegans Hypothetical
           protein F19C7.8b protein.
          Length = 294

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 377 PVRRSDQSEESCFHAIGV*TINKYVQSNGIFLRL 276
           P+ +S +S  S  HA G   I++Y  SNG  L L
Sbjct: 163 PIVKSRRSSSSALHAGGYIVIHEYSPSNGSSLVL 196


>U42439-8|AAM98032.1|  431|Caenorhabditis elegans Hypothetical
           protein F19C7.8a protein.
          Length = 431

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 377 PVRRSDQSEESCFHAIGV*TINKYVQSNGIFLRL 276
           P+ +S +S  S  HA G   I++Y  SNG  L L
Sbjct: 300 PIVKSRRSSSSALHAGGYIVIHEYSPSNGSSLVL 333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,313,224
Number of Sequences: 27780
Number of extensions: 264372
Number of successful extensions: 642
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)