Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D16
         (498 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    25   0.58 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.1  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +2

Query: 296 YSAHTYLLFIHQSHENTTPQTGHSVALVIFQELSLFDLTRISQPREN 436
           Y  H ++  + Q H+NT PQ  ++V  + F  + + D+   +  + N
Sbjct: 402 YRWHAFVDDVFQEHKNTLPQ--YTVQQLDFPGIEIADIKLTTNQQRN 446



 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 110 PDTQALPHPPLRPILNGEF 166
           PDT+ LP PPL  +   ++
Sbjct: 137 PDTKDLPVPPLTEVFPDKY 155


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -1

Query: 204 TP-RLHSDPGRILQNSPLRIGRRGGWGRACVSGSGILPPIPI 82
           TP R HS        SP  +     +G +C+     LPP+P+
Sbjct: 405 TPKRFHSRAASKEDLSPSSLADGARFGGSCLIHGPPLPPLPL 446


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -1

Query: 204 TP-RLHSDPGRILQNSPLRIGRRGGWGRACVSGSGILPPIPI 82
           TP R HS        SP  +     +G +C+     LPP+P+
Sbjct: 405 TPKRFHSRAASKEDLSPSSLADGARFGGSCLIHGPPLPPLPL 446


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,948
Number of Sequences: 438
Number of extensions: 3909
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)