Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_D15
(524 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 193 2e-50
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 193 2e-50
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 193 2e-50
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 71 8e-14
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 32 0.046
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos... 27 1.3
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 27 2.3
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch... 26 3.0
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 26 3.0
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom... 25 5.2
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 5.2
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 6.9
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 9.1
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 25 9.1
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 9.1
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 25 9.1
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 193 bits (470), Expect = 2e-50
Identities = 89/121 (73%), Positives = 102/121 (84%)
Frame = +2
Query: 11 ADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSG 190
A FTAQVI+LNHPGQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK E++PK +KSG
Sbjct: 336 ASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSG 395
Query: 191 DAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVTKAAEK 370
DA I +VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGVIKAV G KVTKAA K
Sbjct: 396 DACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVEKVAPGAAKVTKAAVK 455
Query: 371 A 373
A
Sbjct: 456 A 456
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 193 bits (470), Expect = 2e-50
Identities = 89/121 (73%), Positives = 102/121 (84%)
Frame = +2
Query: 11 ADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSG 190
A FTAQVI+LNHPGQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK E++PK +KSG
Sbjct: 336 ASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSG 395
Query: 191 DAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVTKAAEK 370
DA I +VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGVIKAV G KVTKAA K
Sbjct: 396 DACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVEKVAPGAAKVTKAAVK 455
Query: 371 A 373
A
Sbjct: 456 A 456
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 193 bits (470), Expect = 2e-50
Identities = 89/121 (73%), Positives = 102/121 (84%)
Frame = +2
Query: 11 ADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSG 190
A FTAQVI+LNHPGQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK E++PK +KSG
Sbjct: 336 ASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSG 395
Query: 191 DAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVTKAAEK 370
DA I +VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGVIKAV G KVTKAA K
Sbjct: 396 DACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVEKVAPGAAKVTKAAVK 455
Query: 371 A 373
A
Sbjct: 456 A 456
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 71.3 bits (167), Expect = 8e-14
Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Frame = +2
Query: 2 HEAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSI 181
H F AQ+ +L P ++ GY+ V+ HTA FA++ K+D+ T + ++ P
Sbjct: 555 HATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDK-TNRKSKKPPMFA 613
Query: 182 KSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-VIKAVN 325
G I L P+C+E F+++ +GRF +RD TVAVG V+K ++
Sbjct: 614 TKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKILD 662
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 32.3 bits (70), Expect = 0.046
Identities = 30/100 (30%), Positives = 44/100 (44%)
Frame = +2
Query: 17 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDA 196
F A++ + G I +G T VL H+ + K+ K + + S K
Sbjct: 498 FVAEIQTFDIHGPILSGSTLVL-----HLGRTVTSVSLKIVTVNNKRSR-HIASRKRALV 551
Query: 197 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIK 316
I L PLC+ +E P LGRF +R TVA G++K
Sbjct: 552 RISFLDGLFPLCLA--EECPALGRFILRRSGDTVAAGIVK 589
>SPAC631.01c |acp2||F-actin capping protein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 268
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -3
Query: 201 MAASPDLMDLGLSSVDLPVRRSTFS 127
++ +PDL D+ LSSVD P++ +T S
Sbjct: 27 LSVAPDLADVLLSSVDQPLKVNTCS 51
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 26.6 bits (56), Expect = 2.3
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +3
Query: 174 NPLNLVMPPLSTWFPPSPCVWS---PSRNSHPSVVSPCVT*GRRSPSV**RL*TSRKQVV 344
+PL+ + P L WF V+S P+R+S + P + + SP+ +++V+
Sbjct: 707 SPLSELHPQLREWFSSKQSVYSLQYPTRDSIIAFFQPILELIKASPTELPGGIPRKRRVL 766
Query: 345 AKSPKLPKKPP 377
+ P P PP
Sbjct: 767 PELPLAPDPPP 777
>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 3.0
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -3
Query: 222 LEGTRLTMAASPDLMDLGLSSVDLPVRRSTFSLISANLQAMWAVWQSNTGVYPF 61
LE R ++ +L+D LSSV L + + S++S+ + + + G+ PF
Sbjct: 122 LEVKRTEGVSTTELLDRLLSSVPLEIYSTPVSVLSSQIDLLRRFATDSDGLTPF 175
>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 396
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -3
Query: 186 DLMDLGLSSVDL--PVRRSTFSLISANLQAMWAVWQSNTGVY 67
+L LG++ + P +RST S ++ L W + N GVY
Sbjct: 316 ELSKLGVTIIGSKDPKKRSTHSYVAKILNPEWDAFLKNEGVY 357
>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 163
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -2
Query: 145 TTVDFLFDFGKFAGYVGCVAIQYRCVSV*YLTWV 44
T +D+LF F+ +G + Y ++V Y+ WV
Sbjct: 73 TLIDYLFFSPPFSLSIGPSLLVYLSIAVSYMLWV 106
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 5.2
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Frame = -3
Query: 366 SAALVTLPPPASLKFTAFITPTATVCLMSRTAKRPRGGNSWKDSTH--RGLEGTRLTMAA 193
S +VTLPPPAS ++F T T T + S ++ G+ + +++ + ++++
Sbjct: 183 STDIVTLPPPAS-STSSFSTITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSVISSASLSS 241
Query: 192 SPDLMDLGLSSVDLPVRRSTFSLIS 118
S L ++S PV S+ SL S
Sbjct: 242 SSVLPTSIITSTSTPVTVSSSSLSS 266
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = -3
Query: 381 PLVAFSAALVTLPPPASLKFTAFITPTATVCLMSRTA 271
P + ++ T+PP S+ T + PT ++ + TA
Sbjct: 73 PSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTA 109
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 24.6 bits (51), Expect = 9.1
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 412 VLYTTAILHSPKGVQ-KERRATNSFLFYIFYHGLY 513
VLYT+ +PKGV R ATNS + + + ++
Sbjct: 364 VLYTSGSTGNPKGVAISHRAATNSIKSHGYLYPMF 398
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 24.6 bits (51), Expect = 9.1
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 49 RSNIKRIHTCIGLPHSPHSLQIC-RNQRESRP 141
+S + I CIG+ SPH +C R Q +P
Sbjct: 106 KSGERSIPKCIGMYTSPHLRSVCERIQLNGKP 137
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 24.6 bits (51), Expect = 9.1
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = -2
Query: 256 WEFLEGLHTQGLGGNQVDNGGITRFNGFRV 167
++FL+ + + LGGN + G+T G+ +
Sbjct: 389 YDFLQFMTSSPLGGNMACSAGLTSLLGYHL 418
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 24.6 bits (51), Expect = 9.1
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -3
Query: 126 LISANLQAMWAVWQSNTGV 70
L+SA+ W +W +TGV
Sbjct: 280 LVSASFDTTWRLWDVHTGV 298
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,380,566
Number of Sequences: 5004
Number of extensions: 52170
Number of successful extensions: 157
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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