Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_D15
(524 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 184 3e-47
03_01_0547 + 4093196-4093657,4094267-4095148 184 3e-47
03_01_0544 + 4082528-4082989,4083585-4084466 184 3e-47
03_01_0543 + 4076981-4077442,4078145-4079026 184 3e-47
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 51 7e-07
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 51 7e-07
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 51 7e-07
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 48 3e-06
11_01_0169 - 1365984-1366681,1368669-1368745,1369133-1369257,136... 30 1.3
05_03_0304 - 12000760-12001164,12001176-12001273,12004858-12005152 29 2.3
12_02_0137 + 14153603-14153629,14154136-14154586,14155066-141552... 29 3.0
10_08_1038 - 22485394-22485960,22486712-22487197 28 4.0
09_02_0484 + 9804351-9805203,9806204-9806760,9807243-9807959 28 4.0
11_06_0596 + 25385744-25388890 28 5.3
09_04_0281 - 16360082-16361059,16361608-16361688,16363287-163636... 28 5.3
06_03_1311 - 29241884-29242054,29242802-29242879,29242968-292430... 28 5.3
03_05_0010 + 19622430-19622512,19622539-19623082,19623361-196237... 28 5.3
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 27 7.0
11_04_0242 - 15273774-15274043,15274131-15274235 27 7.0
03_05_0896 - 28592658-28593331,28594069-28595455 27 7.0
12_01_0171 - 1268803-1269500,1271491-1271567,1271941-1272065,127... 27 9.2
11_03_0079 + 9669666-9669728,9670779-9672545 27 9.2
10_01_0217 + 2337950-2338085,2340766-2342436,2342636-2342898,234... 27 9.2
05_07_0100 + 27679280-27680320 27 9.2
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 184 bits (449), Expect = 3e-47
Identities = 83/122 (68%), Positives = 100/122 (81%)
Frame = +2
Query: 5 EAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIK 184
EAA FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K
Sbjct: 324 EAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLK 383
Query: 185 SGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVTKAA 364
+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V K+ G KVTKAA
Sbjct: 384 NGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVTKAA 443
Query: 365 EK 370
K
Sbjct: 444 AK 445
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 184 bits (449), Expect = 3e-47
Identities = 83/122 (68%), Positives = 100/122 (81%)
Frame = +2
Query: 5 EAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIK 184
EAA FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K
Sbjct: 324 EAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLK 383
Query: 185 SGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVTKAA 364
+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V K+ G KVTKAA
Sbjct: 384 NGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVTKAA 443
Query: 365 EK 370
K
Sbjct: 444 AK 445
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 184 bits (449), Expect = 3e-47
Identities = 83/122 (68%), Positives = 100/122 (81%)
Frame = +2
Query: 5 EAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIK 184
EAA FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K
Sbjct: 324 EAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLK 383
Query: 185 SGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVTKAA 364
+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V K+ G KVTKAA
Sbjct: 384 NGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVTKAA 443
Query: 365 EK 370
K
Sbjct: 444 AK 445
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 184 bits (449), Expect = 3e-47
Identities = 83/122 (68%), Positives = 100/122 (81%)
Frame = +2
Query: 5 EAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIK 184
EAA FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K
Sbjct: 324 EAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLK 383
Query: 185 SGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVTKAA 364
+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V K+ G KVTKAA
Sbjct: 384 NGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVTKAA 443
Query: 365 EK 370
K
Sbjct: 444 AK 445
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 50.8 bits (116), Expect = 7e-07
Identities = 21/74 (28%), Positives = 41/74 (55%)
Frame = +2
Query: 101 IACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 280
++ +I ++++TGK+++ P+ + S A++ + K +CVE F LGR +R
Sbjct: 577 VSASMVKILSLLEQKTGKASKKIPRFLTSRQTAVIEVKLEKEVCVEEFSNLKALGRVFLR 636
Query: 281 DMRQTVAVGVIKAV 322
T+AVG++ V
Sbjct: 637 SQGNTIAVGIVSRV 650
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 50.8 bits (116), Expect = 7e-07
Identities = 30/96 (31%), Positives = 49/96 (51%)
Frame = +2
Query: 26 QVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIV 205
+V+VL+ I GY H A + +I +D+ GK ++ P+ +KS A+V
Sbjct: 577 RVLVLDVTIPILIGYQVEFHIHHVKEAARVTKIVALLDK-AGKPSKTAPRFLKSKQNAVV 635
Query: 206 NLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 313
+ P+CV+ F + LGR +R T+AVGV+
Sbjct: 636 QVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 50.8 bits (116), Expect = 7e-07
Identities = 30/96 (31%), Positives = 49/96 (51%)
Frame = +2
Query: 26 QVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIV 205
+V+VL+ I GY H A + +I +D+ GK ++ P+ +KS A+V
Sbjct: 577 RVLVLDVTIPILIGYQVEFHIHHVKEAARVTKIVALLDK-AGKPSKTAPRFLKSKQNAVV 635
Query: 206 NLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 313
+ P+CV+ F + LGR +R T+AVGV+
Sbjct: 636 QVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 48.4 bits (110), Expect = 3e-06
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Frame = +2
Query: 26 QVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKS-------IK 184
Q++ L + GY VL H+ C+ ++ E++D + K + K +K
Sbjct: 324 QILELLDNAIFTAGYKAVLHIHSVVEECEIVDLIEEIDMKKKKEADPKKKKPKRKPLFVK 383
Query: 185 SGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 280
+G + + + +C+E+F +FP LGRF +R
Sbjct: 384 NGAVVVCRIQVNNLICIENFSDFPQLGRFTLR 415
>11_01_0169 -
1365984-1366681,1368669-1368745,1369133-1369257,
1369338-1369426,1370041-1370126,1370705-1370970
Length = 446
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -2
Query: 259 GWEFL-EGLHTQGLGGNQVDNGGITRFNGF 173
G E+L EG + GGN +DN G+T +N F
Sbjct: 365 GMEYLFEGCSSITEGGNSMDNSGVTEYNLF 394
>05_03_0304 - 12000760-12001164,12001176-12001273,12004858-12005152
Length = 265
Score = 29.1 bits (62), Expect = 2.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 195 PPLSTWFPPSPCVW 236
PP+S+ PPSPC W
Sbjct: 175 PPISSGMPPSPCEW 188
>12_02_0137 +
14153603-14153629,14154136-14154586,14155066-14155260,
14155366-14155628,14155964-14156104,14156188-14156283,
14156672-14156749,14157134-14157194,14157324-14157511,
14158441-14158569
Length = 542
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +2
Query: 254 PPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVTKAAEKATNGKK*LALLTAQ 412
PP FA +DM T G I AV E K T ++ + TN LA L +
Sbjct: 7 PPQISFAAKDMDLTEWEGDILAVLVTETDVSKATSSSSRFTNAAAALAKLDGE 59
>10_08_1038 - 22485394-22485960,22486712-22487197
Length = 350
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1
Query: 22 SASHCAKS--PRSNIKRIHTCIGLPHSPHSL 108
S+S CA + P NI RIH IGL SP L
Sbjct: 96 SSSSCAAAAPPSPNILRIHAPIGLARSPAHL 126
>09_02_0484 + 9804351-9805203,9806204-9806760,9807243-9807959
Length = 708
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = -3
Query: 195 ASPDLMDLGLSSVDLPVRRSTFSL 124
A+ DLM G+S V+LPVRR+ F++
Sbjct: 580 ATLDLMYSGISMVNLPVRRNHFAV 603
>11_06_0596 + 25385744-25388890
Length = 1048
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +3
Query: 120 KSKRKSTVVLVNQQRTTLNPLNLVMPPLSTWFPPSPCVWSP 242
K+ K +N+ TTL L++ M P+S+W + +P
Sbjct: 832 KANLKDLFAQINKLHTTLRSLSIRMKPVSSWGSTEAVLMTP 872
>09_04_0281 -
16360082-16361059,16361608-16361688,16363287-16363650,
16363675-16364348
Length = 698
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Frame = +1
Query: 283 HEADGR-RRC---NKGCELQGSRWWQSHQSCRKSH-QWQ 384
H+ GR ++C +GC Q W H+ CR H WQ
Sbjct: 412 HDGFGRLQQCPSQQEGCPSQQDDWHLQHEGCRLQHDDWQ 450
>06_03_1311 -
29241884-29242054,29242802-29242879,29242968-29243049,
29243141-29243212,29243316-29243437,29243541-29243596,
29244264-29244333,29244435-29244518,29244599-29244667,
29244855-29244928,29245014-29245125,29245220-29245510
Length = 426
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 117 PKSKRKSTVVLVNQQRTTLNPLNLVMP 197
P+ R+S + Q TT++P NLV+P
Sbjct: 103 PRRNRRSPALRAAFQETTISPANLVLP 129
>03_05_0010 +
19622430-19622512,19622539-19623082,19623361-19623767,
19623831-19624167,19624290-19624508,19625522-19625826,
19626128-19626287,19626422-19626547
Length = 726
Score = 27.9 bits (59), Expect = 5.3
Identities = 24/73 (32%), Positives = 28/73 (38%)
Frame = +2
Query: 2 HEAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSI 181
H DF + G I NGY P D + IKE + R GKST D P
Sbjct: 170 HSGNDFLETREEAMYMGNI-NGYHPQGD--QGRNQPRPRTIKEAITTRGGKSTRDPPYPN 226
Query: 182 KSGDAAIVNLVPS 220
+G I PS
Sbjct: 227 PTGTNGIAREAPS 239
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 27.5 bits (58), Expect = 7.0
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = +3
Query: 105 PANLPKSKRKSTVVLVNQQRTTLNPLNLVMPPLSTW---FPPSPCVWSPSRNSHPSVVSP 275
P L S R + + + +P + PP +W PPS +P R S PS S
Sbjct: 153 PIRLSPSPRSMSRTRPSSAASRSSPPFALQPPTPSWRPSTPPSAKTLTPPRRS-PSPAS- 210
Query: 276 CVT*GRRSPS 305
+T RRSPS
Sbjct: 211 TLTPPRRSPS 220
>11_04_0242 - 15273774-15274043,15274131-15274235
Length = 124
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 116 QICRLCGLCGNPIQVCI 66
QIC +C CG P VCI
Sbjct: 74 QICAVCTCCGGPHGVCI 90
>03_05_0896 - 28592658-28593331,28594069-28595455
Length = 686
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +2
Query: 98 HIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPP 259
H+ + EIK+ +R G+ + ++++GD SKP E F P
Sbjct: 638 HVVLRIEEIKKSSERLEGRDPQQQASNLEAGDDQ-----TSKPESAEGLNPFAP 686
>12_01_0171 -
1268803-1269500,1271491-1271567,1271941-1272065,
1272146-1272234,1272851-1272936,1273509-1273765
Length = 443
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -2
Query: 259 GWEFL-EGLHTQGLGGNQVDNGGITRFNGF 173
G E+L EG + GGN +DN G+ +N F
Sbjct: 362 GMEYLFEGCSSITEGGNSMDNSGMAEYNLF 391
>11_03_0079 + 9669666-9669728,9670779-9672545
Length = 609
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 17 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 139
FTA+ +H Q++N VLDC AH+ CK+ + E ++
Sbjct: 572 FTAENRSKSH--QVNN-VLAVLDCLQAHMECKYDMLTESLE 609
>10_01_0217 +
2337950-2338085,2340766-2342436,2342636-2342898,
2343027-2343236,2343436-2343654,2344038-2345000,
2345279-2345374,2345482-2345580,2345953-2346142,
2346594-2346823
Length = 1358
Score = 27.1 bits (57), Expect = 9.2
Identities = 24/78 (30%), Positives = 32/78 (41%)
Frame = -3
Query: 393 SYFLPLVAFSAALVTLPPPASLKFTAFITPTATVCLMSRTAKRPRGGNSWKDSTHRGLEG 214
S F L A PPP TP L + A+R GN + + +R +
Sbjct: 123 SIFSALANADRAASAAPPPPP-------TPPGFSRLTAADAERAVSGNLCRCTGYRPILD 175
Query: 213 TRLTMAASPDLMDLGLSS 160
+ AA DL DLGL+S
Sbjct: 176 ACKSFAADVDLEDLGLNS 193
>05_07_0100 + 27679280-27680320
Length = 346
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 331 GSRWWQSHQSCRKSHQWQEVASTLNS 408
GSR+ + ++ + QWQEVA +NS
Sbjct: 54 GSRYVELNRGNLRQKQWQEVADAVNS 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,594,454
Number of Sequences: 37544
Number of extensions: 398098
Number of successful extensions: 1428
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1427
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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