Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_D14
(482 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein S30|S... 51 8e-08
SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein S30|Schizosa... 51 8e-08
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 29 0.49
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 27 2.0
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 26 2.6
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 26 3.4
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 3.4
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c... 26 3.4
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 4.5
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 25 6.0
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 25 6.0
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 25 7.9
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce... 25 7.9
>SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein
S30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 61
Score = 51.2 bits (117), Expect = 8e-08
Identities = 28/60 (46%), Positives = 31/60 (51%)
Frame = +2
Query: 230 GKVHGSLARAGKVKGQTPXXXXXXXXXXXXXXXXXXIQYNRRFVNVVQTFGRRRGPNSNS 409
GKVHGSLARAGKVK QTP + Y RRFVNV G +R N +S
Sbjct: 2 GKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPSS 61
>SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein
S30|Schizosaccharomyces pombe|chr 1|||Manual
Length = 61
Score = 51.2 bits (117), Expect = 8e-08
Identities = 28/60 (46%), Positives = 31/60 (51%)
Frame = +2
Query: 230 GKVHGSLARAGKVKGQTPXXXXXXXXXXXXXXXXXXIQYNRRFVNVVQTFGRRRGPNSNS 409
GKVHGSLARAGKVK QTP + Y RRFVNV G +R N +S
Sbjct: 2 GKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPSS 61
>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 28.7 bits (61), Expect = 0.49
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +2
Query: 47 THVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAP 160
T D+N QES+ + LL +VES L MC AP
Sbjct: 120 TEAGDINRQESVSMVPP---LLLNVESHHKVLDMCAAP 154
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 26.6 bits (56), Expect = 2.0
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -3
Query: 414 FYELELGPRRRPKVWTTFTNLLLYWILRLARPVLFFFFCC 295
FYEL RP + + LL+ +++ ++ +L FFF C
Sbjct: 6 FYELYNIKNIRPLIPSFHVCLLIMFLILYSQEILSFFFMC 45
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 26.2 bits (55), Expect = 2.6
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = -3
Query: 270 LTLPARARDPCTLPPRRGTVRSSSVDESSDTRHESSR 160
+TLP RDP P V E+S HE SR
Sbjct: 1562 MTLPIELRDPSLYPQVNSDSSLEDVKENSFRPHEISR 1598
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 25.8 bits (54), Expect = 3.4
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Frame = -2
Query: 139 SHLLTLNISKK----PEAILDITDGFLTIHVKDVRRLTSNV 29
+++ T+NIS+K + LDI + ++V+D R +NV
Sbjct: 1102 NYVTTMNISEKGYSMDSSCLDIGVSIILVYVRDTRAFVANV 1142
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.8 bits (54), Expect = 3.4
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 110 LADVESEEVTLSMCGAPLEDSCLVSELSSTELDLTVPLLGG 232
++D +EE++ ++ GAP+ +S S L T P + G
Sbjct: 119 VSDTNNEEISKNIYGAPILESTSSDFQSKDSLSTTQPSVSG 159
>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
2|||Manual
Length = 812
Score = 25.8 bits (54), Expect = 3.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 318 VLFFFFCCFSTLGVWPLTLPAR 253
+++ FFCC S +GV + P R
Sbjct: 331 IVYSFFCCLSAVGVLHMLNPFR 352
>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 172
Score = 25.4 bits (53), Expect = 4.5
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -2
Query: 478 FFFFXKQKRCYICIVVLFTELILRVRVGSTTAAEGLDNV 362
FF+ R +C + +FTE+ ST + E LD +
Sbjct: 129 FFYAFLNIRTLVCGITIFTEIARYSMYHSTLSVEKLDEM 167
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 25.0 bits (52), Expect = 6.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 326 HVRSSSFSFAVSLLWASGL*LYQHEPGIRALYH 228
+V ++S LW++ L + QHE G ALY+
Sbjct: 159 NVANNSLKVKPLTLWSTLLYIVQHEGGYPALYN 191
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 25.0 bits (52), Expect = 6.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 59 DVNGQESIGDIKNRLRLLADVESEEVTLSMCGAP 160
++N QE++ + L DVE V L MC AP
Sbjct: 140 NINRQEAVSMLPP---LFLDVEPHHVILDMCAAP 170
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 24.6 bits (51), Expect = 7.9
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +1
Query: 274 PD-AQSRETAKEKEEDRTC*AQDPIQQEIRERCPDLRPPSWTQ 399
PD AQ E K+ED +D ++ + + P + P W Q
Sbjct: 17 PDSAQPMELDVSKKEDTEPEVRDEAKEFLLSQLPQVEVPEWAQ 59
>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 399
Score = 24.6 bits (51), Expect = 7.9
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 161 LEDSCLVSELSSTELDLTVPLLGGKVHGSLARA 259
+ D+CL++E + TEL ++ L K+ G L RA
Sbjct: 199 IRDACLLAEQAETEL-ISNKRLSTKLPGRLQRA 230
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,832,297
Number of Sequences: 5004
Number of extensions: 32239
Number of successful extensions: 100
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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