Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_D14
(482 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0507 + 3655570-3655573,3655648-3655832 67 6e-12
10_08_0704 - 20018477-20018542,20018693-20018704,20018731-200189... 29 1.5
02_01_0460 + 3323236-3323950,3325087-3326025,3326104-3326723 29 2.6
08_01_0566 - 5028512-5029150 28 3.4
07_03_0447 + 18301421-18301520,18301900-18302060 28 4.5
02_05_0690 - 30943184-30943305,30944048-30944459,30944549-309446... 28 4.5
12_01_0049 + 417325-419068,419667-420307 27 6.0
06_03_1248 + 28685911-28687719 27 6.0
05_05_0276 + 23771233-23771268,23773552-23773897,23774425-237745... 27 6.0
04_04_0562 + 26252253-26253014 27 6.0
02_01_0130 - 938530-939990 27 6.0
01_06_1249 - 35714645-35716003,35716700-35716761,35717007-357171... 27 6.0
01_01_0069 + 536787-537068,537193-537493,537528-537581,538848-53... 27 6.0
11_06_0311 - 22279202-22279690,22279976-22280103,22281249-222813... 27 7.9
03_02_0650 + 10174905-10175000,10175321-10175376,10175467-101755... 27 7.9
>06_01_0507 + 3655570-3655573,3655648-3655832
Length = 62
Score = 67.3 bits (157), Expect = 6e-12
Identities = 32/59 (54%), Positives = 37/59 (62%)
Frame = +2
Query: 230 GKVHGSLARAGKVKGQTPXXXXXXXXXXXXXXXXXXIQYNRRFVNVVQTFGRRRGPNSN 406
GKVHGSLARAGKV+GQTP +QYNRRFV V FG++RGPNS+
Sbjct: 2 GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
>10_08_0704 -
20018477-20018542,20018693-20018704,20018731-20018927,
20018928-20018999,20019159-20021289
Length = 825
Score = 29.5 bits (63), Expect = 1.5
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 53 VLDVNGQESIGDIK--NRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTE 202
+L+++ G I N+L+ L+D +CG PL SC S L+S E
Sbjct: 725 ILNLSNNHLSGKIPTGNQLQTLSDPSIYHNNYGLCGFPLNISCTSSSLASDE 776
>02_01_0460 + 3323236-3323950,3325087-3326025,3326104-3326723
Length = 757
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 95 NRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTELD 208
N+LR L D L +CG PL+ SC S+T L+
Sbjct: 665 NQLRTLDDPSIYANNLGLCGFPLKISCSNHSSSTTTLE 702
>08_01_0566 - 5028512-5029150
Length = 212
Score = 28.3 bits (60), Expect = 3.4
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Frame = +2
Query: 20 MQLHIRGQSTHVL--DVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSEL- 190
MQ+ +R + L +VN +++G +K +++ + + + L G LED ++E
Sbjct: 1 MQIFVRTVTAGPLAVEVNPWDTVGKVKAKIQAKGGIPAAQQRLMFAGRHLEDGRTLAEYG 60
Query: 191 --SSTELDLTVPLLGGKVHG 244
L L + L GG G
Sbjct: 61 IKKEANLHLALRLRGGGAAG 80
>07_03_0447 + 18301421-18301520,18301900-18302060
Length = 86
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 20 MQLHIRGQSTHV-LDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLED 169
MQ+ +R + L+V G ++IGD+K ++ + +++ L G L+D
Sbjct: 1 MQIFVRTLDECITLEVEGSDTIGDVKVKIHDKNGIPADDQRLMHAGRQLDD 51
>02_05_0690 -
30943184-30943305,30944048-30944459,30944549-30944610,
30944724-30944787,30944880-30944947,30945039-30945168,
30945276-30945341,30945794-30946369
Length = 499
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 372 WTTFTNLLLYWILRLARPVLFFFFCCFST 286
W + +L WIL PVL FFC FS+
Sbjct: 66 WGSLVHLGDSWILAFWFPVLTEFFCAFSS 94
>12_01_0049 + 417325-419068,419667-420307
Length = 794
Score = 27.5 bits (58), Expect = 6.0
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Frame = +2
Query: 41 QSTHVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPL--EDSCLVSELSST--ELD 208
Q V+D++G G I +RL LAD++ TL + G L E +S L++T +
Sbjct: 277 QKLQVMDLSGNRLNGTIPDRLGSLADLK----TLDLSGNALTGEIPASLSNLTTTLQAFN 332
Query: 209 LTVPLLGGKVHGSLAR 256
++ L G+V SLA+
Sbjct: 333 VSNNNLSGQVPASLAQ 348
>06_03_1248 + 28685911-28687719
Length = 602
Score = 27.5 bits (58), Expect = 6.0
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 116 DVESEEVTLSMCGAPLEDSCLVSELSSTELDLT--VPLLGGKVHGSLARAGKVKGQTP 283
DVE+E+ + S PL + + E +STE T V G KV ++ R + +G+ P
Sbjct: 500 DVETEQASSSDPATPLNEEAINEEGTSTETGKTKKVAFKGSKVKTAMER--RPEGEQP 555
>05_05_0276 +
23771233-23771268,23773552-23773897,23774425-23774541,
23774712-23774810,23774949-23775016,23775107-23775181,
23775386-23775931,23776040-23776092,23776163-23776204,
23776314-23776458,23776541-23776651,23777496-23777921,
23778116-23778373
Length = 773
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -1
Query: 230 HQEEAL*GRAQLMKALTQDMSPQGAHRT*TESPPHSQHQQEA 105
H+++ L A +M+A M T + PP QH+Q A
Sbjct: 204 HRKDHLPKNANIMQAQHYPMGKSSGFNTGSSCPPRKQHKQTA 245
>04_04_0562 + 26252253-26253014
Length = 253
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 176 DMSPQGAHRT*TESPPHSQHQQEA 105
D+ G HR E+ PH++HQ++A
Sbjct: 79 DVRCPGVHRDAIEAEPHTEHQRDA 102
>02_01_0130 - 938530-939990
Length = 486
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -3
Query: 264 LPARARDPCTLPPRRGTVRSSSV-DESSDTRHESSRGAPHID 142
LP+ +R CT P G+V V D + T HE+S + D
Sbjct: 32 LPSTSRISCTEPSNGGSVMELEVMDRNEQTYHENSSASEDED 73
>01_06_1249 -
35714645-35716003,35716700-35716761,35717007-35717181,
35717276-35717301,35717917-35717983,35719803-35719945,
35720337-35720349
Length = 614
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -3
Query: 276 WPLTLPARARD-PCTLPPRRGTVRSSSVDESSDTRHESSRGAPHID 142
+P P +D P R G R +VDE + R E GAPH D
Sbjct: 91 YPDVFPGSYQDEPDGEAGRAGLRRRQAVDEVAARREEPQGGAPHDD 136
>01_01_0069 +
536787-537068,537193-537493,537528-537581,538848-539241,
539345-539595,539678-539798,539893-540133,540341-540445,
540571-540615,540738-540890,541132-541410,541705-541841,
541975-542017,542228-542329
Length = 835
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 194 MKALTQDMSPQGAHRT*TESPPHSQHQQE 108
+K + D SPQG T S PH HQQ+
Sbjct: 30 LKRMQHDYSPQGT--IITTSTPHDHHQQQ 56
>11_06_0311 -
22279202-22279690,22279976-22280103,22281249-22281355,
22282799-22282888,22283590-22283660
Length = 294
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -1
Query: 155 HRT*TESPPHSQHQQEAGGDS*Y 87
H T T SP H+QH Q AG Y
Sbjct: 205 HPTNTLSPLHNQHHQSAGASQVY 227
>03_02_0650 +
10174905-10175000,10175321-10175376,10175467-10175540,
10176215-10176753,10176845-10177186,10177520-10177879,
10177982-10178193,10178881-10179169,10179469-10180152
Length = 883
Score = 27.1 bits (57), Expect = 7.9
Identities = 19/77 (24%), Positives = 30/77 (38%)
Frame = +2
Query: 8 GRYKMQLHIRGQSTHVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSE 187
G ++ H G + V+ D++ R L+ + S S CG E +
Sbjct: 585 GLCRLLAHTFGPAQRVVGSKHSSPGPDLRMASRSLSPLSSASKLCSRCGQADEPKMAATT 644
Query: 188 LSSTELDLTVPLLGGKV 238
SS+ +T LGG V
Sbjct: 645 FSSSPSKVTTAKLGGGV 661
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,491,446
Number of Sequences: 37544
Number of extensions: 239392
Number of successful extensions: 742
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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