Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D13
         (534 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   1.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   1.7  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   2.2  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   3.9  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   3.9  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   6.8  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +2

Query: 143 SDDNVGVDHFFKIPRTISEAESEGWRKISRPPGPLPELIMYCTSGRLVCP 292
           SDDN+G         T  E ++E   +    PG L  L    + G +V P
Sbjct: 653 SDDNLGSCGSMGDAHTPPEDDAESLNQSISSPGALSGLSSLTSPGGMVLP 702


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +2

Query: 143 SDDNVGVDHFFKIPRTISEAESEGWRKISRPPGPLPELIMYCTSGRLVCP 292
           SDDN+G         T  E ++E   +    PG L  L    + G +V P
Sbjct: 545 SDDNLGSCGSMGDAHTPPEDDAESLNQSISSPGALSGLSSLTSPGGMVLP 594


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 309 PVL*NNGHTSLPDVQYMINSGSGPGGR 229
           P +  N HT+L  +   +N G  PG +
Sbjct: 692 PTIKENFHTALEIMNRAVNIGQQPGAK 718


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 16  NRSGRYRPNLYVI 54
           +R+G YRP++Y I
Sbjct: 480 HRNGMYRPSIYFI 492


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 16  NRSGRYRPNLYVI 54
           +R+G YRP++Y I
Sbjct: 480 HRNGMYRPSIYFI 492


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +3

Query: 69  SLYSSLLPRP 98
           ++YS+LLPRP
Sbjct: 89  AIYSNLLPRP 98


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,831
Number of Sequences: 336
Number of extensions: 3126
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12992348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)