Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D13
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   3.1  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   7.1  
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual         25   7.1  
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni...    25   9.4  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   9.4  
SPAC1952.07 |rad1||checkpoint clamp complex protein Rad1|Schizos...    25   9.4  

>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = -1

Query: 222  FRHPSLSASLMVR--GILKKWSTPTLSSDQPYFTLSP 118
            FR P   + L+     +L KWSTPT   +   F  SP
Sbjct: 2123 FREPIRISKLLQNFPALLSKWSTPTKLVEPSQFRASP 2159


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 304 LVKQRTHQPARRTVHD*LRK-RAWRSTYLPPSFTLCLANGT 185
           +V  +T +P R  V D LRK +  R+   PP+    LA  T
Sbjct: 21  IVAHKTGEPVRYEVEDDLRKLKPSRTAPKPPAINTNLAEDT 61


>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 119 RCVVIHKRPWQERRI*RSSYYMITYKFGRYRPL 21
           +C++I   PW  + + RSS Y +    G  + L
Sbjct: 229 KCIIIDP-PWPNKSVARSSVYKVNRNLGYLKAL 260


>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
           Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 430 LLDYHTILCHRRVSEERTDSQNRKW 504
           L +Y  +LC     EE ++S+  KW
Sbjct: 159 LHEYSGMLCFELAKEEASESERTKW 183


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 375 GRNSSNGMLPPTTGNRPGIIGL 440
           GR +SNG  PP  GN  G +GL
Sbjct: 105 GRPASNGPTPPNPGN--GNVGL 124


>SPAC1952.07 |rad1||checkpoint clamp complex protein
           Rad1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 323

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 14  SIVADGIVRIYT*SYNMKIVIFFALATAVCGLQHNGLRVKYGW 142
           SI  DG  RI T +++   V        +C +Q+NG    + W
Sbjct: 83  SIYTDGKERISTSAWDQPTVNIMHKRGVICKVQYNGPGCPFIW 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,505,878
Number of Sequences: 5004
Number of extensions: 55600
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)