Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D13
         (534 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0050 + 10649275-10649655,10649807-10649921,10651003-106510...    29   1.8  
10_01_0194 + 2130274-2131725                                           28   4.1  
07_03_1763 - 29316969-29318120                                         27   7.2  
01_01_0911 - 7176355-7176372,7176502-7176756,7177352-7177615,717...    27   7.2  
05_07_0082 + 27575924-27576917,27577371-27577732                       27   9.5  
02_05_0059 - 25482207-25482271,25482432-25482651                       27   9.5  
01_06_0097 + 26413647-26415101                                         27   9.5  
01_01_1096 - 8659091-8659459,8660730-8661050,8661416-8661694,866...    27   9.5  

>01_02_0050 +
           10649275-10649655,10649807-10649921,10651003-10651009,
           10651035-10651216,10651318-10651530,10651621-10651688,
           10651772-10651846,10651961-10652068,10652413-10652530,
           10652652-10652793,10653084-10653140,10653281-10653701,
           10654064-10654528
          Length = 783

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 397 CSRRRQGTGQGLLDYHTILCHRRVSEERTDSQ 492
           CSRR  G  +G +D+  +   RRVS E  D +
Sbjct: 36  CSRRELGRAEGEIDFGVVDKRRRVSPEDDDGE 67


>10_01_0194 + 2130274-2131725
          Length = 483

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 532 PHTAVLQRSSIFYFGNRSFLQRLFGGIILCGSPIIPGRFPVVGG 401
           P+ A L   + F FG  +  QRL   ++    P +P   P+VGG
Sbjct: 157 PYDAYLYIDN-FMFGRHTEKQRLLNFLLEYNPPSLPAVLPIVGG 199


>07_03_1763 - 29316969-29318120
          Length = 383

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 117 LCCNPQTAVARAKNITIFILYDY 49
           LC  P   +A A N T++ LYDY
Sbjct: 119 LCGGPNITMAMADNKTMYALYDY 141


>01_01_0911 -
           7176355-7176372,7176502-7176756,7177352-7177615,
           7177691-7177810,7177910-7178041,7178136-7178252,
           7178335-7178459,7178611-7178920,7179368-7179550,
           7179643-7179787,7180126-7181355,7181454-7181563,
           7181768-7182037,7182130-7182963
          Length = 1370

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 116 NGLRVKYGWSDDNVGVDHFFKIPRTISEAESEGWRKISRPPGPLPELI 259
           N +R    W+D +   D +   PR   +   +GWR++ RPP   P+ +
Sbjct: 273 NDVRYNPIWADADEAADLY---PR---QGSGKGWRELMRPPSLYPQRV 314


>05_07_0082 + 27575924-27576917,27577371-27577732
          Length = 451

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 339 GRAICNPKTNPVL*NNGHTSLPDVQYMINSGSGPGGRLI 223
           G AI  P   P +   G  S PD+ ++  +G+GP GR I
Sbjct: 355 GSAI-RPGIAPNVKFGGSGSYPDLPWVSTTGTGPNGRTI 392


>02_05_0059 - 25482207-25482271,25482432-25482651
          Length = 94

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 373 REEIRQMACSRRRQGTGQGLLD 438
           REE+R +  SRRR+G GQ + D
Sbjct: 9   REEVRLLDVSRRRRGGGQQVND 30


>01_06_0097 + 26413647-26415101
          Length = 484

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 445 CGSPIIPGRFPVVGGSMPFDE 383
           CG P++  RFP + GS+  D+
Sbjct: 392 CGKPVLATRFPSIKGSIVVDD 412


>01_01_1096 -
           8659091-8659459,8660730-8661050,8661416-8661694,
           8661781-8661897,8662142-8662210,8663204-8663397,
           8663552-8663633
          Length = 476

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 222 FRHPSLSASLMVRGILKKWSTPTLSSDQPYFTLS 121
           F HP      M  GI     +P+++S  PY +L+
Sbjct: 176 FHHPEFGGVPMTPGIYPPLQSPSIASPHPYASLA 209


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,978,911
Number of Sequences: 37544
Number of extensions: 391312
Number of successful extensions: 1015
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)