Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D12
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...   239   2e-64
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...   238   5e-64
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    27   2.0  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   2.6  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   4.6  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    25   6.1  

>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score =  239 bits (585), Expect = 2e-64
 Identities = 111/181 (61%), Positives = 131/181 (72%)
 Frame = +1

Query: 37  MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 216
           MGAY+Y++EL +KK SDV  FL R+R W+YRQ+  +HRA RP+RPDKARRLGY+AKQGYV
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 217 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYW 396
           I+RI               TYGKP   GVN LK  R+ +  AEE            NSYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120

Query: 397 VAQDSSYKYFEVILIDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGLGKGHRF 576
           V QD++YK+FEVIL+DPSHKAIRRDP+INWIVN VHKHRE RGLTS GK SRG+GKGHRF
Sbjct: 121 VNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRF 180

Query: 577 S 579
           +
Sbjct: 181 N 181


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score =  238 bits (582), Expect = 5e-64
 Identities = 110/181 (60%), Positives = 131/181 (72%)
 Frame = +1

Query: 37  MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 216
           MGAY+Y++EL +KK SDV  FL R+R W+YRQ+  +HRA RP+RPDKARRLGY+AKQGYV
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 217 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYW 396
           I+RI               TYGKP   GVN LK  R+ +  AEE            NSYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120

Query: 397 VAQDSSYKYFEVILIDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGLGKGHRF 576
           V QD++YK+FEVIL+DPSHKAIRRDP+INWIVN VHKHRE RGLTS GK SRG+GKGHR+
Sbjct: 121 VNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRY 180

Query: 577 S 579
           +
Sbjct: 181 N 181


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 123 LPHSYTQEKSHNIAQLFPIQLLYISVRAH 37
           LPHS   EKS N+ Q   +QL  ++++ H
Sbjct: 761 LPHSCEMEKSLNVLQHKVLQLQAVNMKLH 789


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 403  QDSSYKYFEVILIDPSHKAIRRDPKINWIVNAVHK 507
            +  S KY E     P H  +   PK  WI++ +HK
Sbjct: 1182 KSESNKYQEQAYSTPLHHTLNVLPKNKWILSRMHK 1216


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 141 TSQLAILPHSYTQEKSHNIAQLFPIQLL 58
           +SQL  L H+Y +EKS N   L  IQ L
Sbjct: 433 SSQLEHLKHNYEEEKSMNENLLVRIQTL 460


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 320 LATCSLLLRSVLVAGVVVYACLIHTG 397
           L T + +   V +AG+ +Y C+++TG
Sbjct: 730 LITAAAMDCGVAIAGLFIYFCVVYTG 755


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,337,303
Number of Sequences: 5004
Number of extensions: 43956
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)