Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D12
         (579 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           23   2.9  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   3.8  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   3.8  

>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 526 LTSAGKSSRGLGKG 567
           +T  GK  +GLGKG
Sbjct: 1   MTGRGKGGKGLGKG 14


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 486 DRECGTQTSRDARSDVRREKL 548
           +R C    +R+ R D R EKL
Sbjct: 1   ERSCSRDRNREYRKDRRYEKL 21


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 486 DRECGTQTSRDARSDVRREKL 548
           +R C    +R+ R D R EKL
Sbjct: 1   ERSCSRDRNREYRKDRRYEKL 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,175
Number of Sequences: 438
Number of extensions: 3391
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)