Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D11
         (533 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0758 + 20848078-20849579,20849660-20849850,20849944-208501...    29   3.1  
06_03_0854 + 25400855-25403741,25406174-25407708                       27   9.5  
04_04_0940 - 29539138-29539626,29540125-29540531,29540631-295406...    27   9.5  

>08_02_0758 +
           20848078-20849579,20849660-20849850,20849944-20850179,
           20850254-20850973
          Length = 882

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 246 SSDPDLTMRLSSGSHALGATQ*TGPRCKTCPKRRD 350
           S  PD T RLS       A+     R KTCP++ D
Sbjct: 304 SLSPDCTSRLSPKDQTFTASSHLSLRSKTCPEKSD 338


>06_03_0854 + 25400855-25403741,25406174-25407708
          Length = 1473

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
 Frame = -3

Query: 186 NINITWIIPLLGPLGAKKGHTIPMTPQNTVKIVMGTNEKPIL--------TYFLDVFYNY 31
           N+ I+ + P L   G      +P  P+ T        EKP+L        T F +  ++Y
Sbjct: 764 NVVISPVPPTLAASGVAAWPPVPAIPELTTAAAAPLPEKPVLTAHDVVMATLFPNGVFSY 823

Query: 30  TISNKHQP 7
           T  + H P
Sbjct: 824 TAGSSHAP 831


>04_04_0940 -
           29539138-29539626,29540125-29540531,29540631-29540662,
           29540809-29541086,29541164-29542515,29542616-29542874
          Length = 938

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/47 (23%), Positives = 25/47 (53%)
 Frame = -3

Query: 312 FIGLPQVREIQMRVSLSSLGPMSGFICAM*AHSQNNQHVTAVNINIT 172
           F+G+ Q  +   + +++ +GP+S     + +H  N  HV  ++ + T
Sbjct: 81  FLGIVQALQFMEKDTVAIIGPLSSTTAHVLSHLANELHVPLMSFSAT 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,423,767
Number of Sequences: 37544
Number of extensions: 277495
Number of successful extensions: 561
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)