Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D11
         (533 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68227-12|CAA92517.2|   86|Caenorhabditis elegans Hypothetical p...   103   6e-23
AF025453-12|AAK31405.1|  600|Caenorhabditis elegans Hypothetical...    30   0.91 
Z71265-2|CAA95834.2|  128|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z83229-2|CAB05739.1| 1589|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z82272-8|CAB05223.1|  337|Caenorhabditis elegans Hypothetical pr...    27   6.4  
Z82260-13|CAB05143.1|  337|Caenorhabditis elegans Hypothetical p...    27   6.4  
Z82055-10|CAB04848.2|  659|Caenorhabditis elegans Hypothetical p...    27   8.5  

>Z68227-12|CAA92517.2|   86|Caenorhabditis elegans Hypothetical
           protein F49C12.13 protein.
          Length = 86

 Score =  103 bits (248), Expect = 6e-23
 Identities = 38/78 (48%), Positives = 58/78 (74%)
 Frame = +2

Query: 80  VPITIFTVFWGVIGIVCPFFAPKGPNRGIIQVILILTAVTCWLFWLCAYMAQMNPLIGPR 259
           +P+   + FW +IG   P+  PKGPNRGIIQ+++I+TAV CW+FW+  ++ Q+NPLIGP+
Sbjct: 5   IPLVSVSAFWAIIGFGGPWIVPKGPNRGIIQLMIIMTAVCCWMFWIMVFLHQLNPLIGPQ 64

Query: 260 LDNETLIWISRTWGNPMN 313
           ++ +T+ WIS  WG+  N
Sbjct: 65  INVKTIRWISEKWGDAPN 82


>AF025453-12|AAK31405.1|  600|Caenorhabditis elegans Hypothetical
           protein C08F1.8 protein.
          Length = 600

 Score = 30.3 bits (65), Expect = 0.91
 Identities = 19/65 (29%), Positives = 32/65 (49%)
 Frame = -2

Query: 442 TRIISTLLCLIIYLFIRNDRFITWTYYTKEVSLLFGQVLHLGPVHWVAPSA*DPDESLIV 263
           T +   LLC +    +R+++ I   YYT  VS     ++ + P+ +VA  A + D+    
Sbjct: 176 TELYCILLCSVDTSLVRDEKVIIGFYYTTYVSCPILNIIVM-PIVYVACLAYNSDQLAFS 234

Query: 262 KSGSD 248
           K  SD
Sbjct: 235 KEASD 239


>Z71265-2|CAA95834.2|  128|Caenorhabditis elegans Hypothetical
           protein M05B5.2 protein.
          Length = 128

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
 Frame = +2

Query: 128 CPFFAPKGPNRGIIQ----VILILTAVTCWLFWLCAYMAQM 238
           C F  P G    II     ++L+L A++CW  W C    Q+
Sbjct: 82  CQFAIPTGAVVAIILAAIVLLLVLIAMSCWCCWCCPLYKQL 122


>Z83229-2|CAB05739.1| 1589|Caenorhabditis elegans Hypothetical protein
            F54F11.2 protein.
          Length = 1589

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 332  SFTPWSCSLGCPKCVRSR*ESHCQVWV 252
            +F  +  +  CP   +S  E HC+VWV
Sbjct: 1558 NFPAFQTAFNCPLGSKSAPEQHCEVWV 1584


>Z82272-8|CAB05223.1|  337|Caenorhabditis elegans Hypothetical
           protein F55G11.1 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +2

Query: 80  VPITIFTVFWGVIGIVCPFFAPKGPNRGIIQVILILTAVTCWLFWLCAYMAQM 238
           VP+T   + W  I   CP F P   +  ++   + +  V   L  +C +  QM
Sbjct: 3   VPLTSLVINWSKIENACPEFIPN--HWDLVLATIAVFGVVASLILICNFRKQM 53


>Z82260-13|CAB05143.1|  337|Caenorhabditis elegans Hypothetical
           protein F55G11.1 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +2

Query: 80  VPITIFTVFWGVIGIVCPFFAPKGPNRGIIQVILILTAVTCWLFWLCAYMAQM 238
           VP+T   + W  I   CP F P   +  ++   + +  V   L  +C +  QM
Sbjct: 3   VPLTSLVINWSKIENACPEFIPN--HWDLVLATIAVFGVVASLILICNFRKQM 53


>Z82055-10|CAB04848.2|  659|Caenorhabditis elegans Hypothetical
           protein T26H2.7 protein.
          Length = 659

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 446 INKNYFNIIMFNNLFIYSKRSIYYMDLLH*RGVSSLW 336
           I+KNY N+I+ N   +Y     Y + L+H   + +LW
Sbjct: 267 ISKNYSNLILSNRFLVYFGDISYSLYLVH-WPIFALW 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,184,073
Number of Sequences: 27780
Number of extensions: 262787
Number of successful extensions: 692
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)