Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D11
         (533 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   2.6  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    23   2.6  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.6  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   4.5  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   7.9  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.9  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 108 QNTVKIVMGTNEKPILTYFLDVF 40
           QN  KI+  TNEK I  Y + +F
Sbjct: 60  QNIFKIIKSTNEK-ITRYIIRMF 81


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 108 QNTVKIVMGTNEKPILTYFLDVF 40
           QN  KI+  TNEK I  Y + +F
Sbjct: 43  QNIFKIIKSTNEK-ITRYIIRMF 64


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 322 LGPVHWVAPSA*DPDESLIVKSGSDEWVH 236
           + PV+ +   A D  ++LIV   SDE  H
Sbjct: 197 MDPVNTIVYMADDKGDALIVYQNSDESFH 225


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 458 NLQIINKNYFNIIMFNNLFIYSKRSIYY 375
           N    N NY N   +NN +  + + +YY
Sbjct: 326 NYNNYNNNYNNYNNYNNNYNNNYKKLYY 353


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 407 LFIYSKRSIYYMDL 366
           L++Y++ S YY DL
Sbjct: 292 LYVYAQESDYYPDL 305


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 382 FITWTYYTKEVSLLFGQVLHLG 317
           F +W Y T    + FG  +H G
Sbjct: 173 FSSWPYDTHRCRINFGSWVHSG 194


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,976
Number of Sequences: 438
Number of extensions: 3675
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)