Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D10
         (358 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    27   0.066
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   2.5  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   5.8  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   5.8  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   5.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    20   7.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    20   7.6  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 27.1 bits (57), Expect = 0.066
 Identities = 10/49 (20%), Positives = 27/49 (55%)
 Frame = -3

Query: 173 LTNGMISIWLQDNHIAHISISECGKMIYHIFCIVYVSYSDAYQNLRYPS 27
           +T  ++++WL+ +    + I+     I H+FC++ V +   +  ++ P+
Sbjct: 258 MTMTLMTLWLEPSSTERMIIANLN-FILHLFCLLDVQWRIPFNGIQMPN 305


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 167 NGMISIWLQDNHIAHISISECGK 99
           NG ++ W+  NH  H   S  G+
Sbjct: 342 NGSVTNWVSGNHDNHRVASRFGR 364


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = +1

Query: 115 IEMCAMWLSC 144
           I +C +WL+C
Sbjct: 106 IHLCKLWLTC 115


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = +1

Query: 115 IEMCAMWLSC 144
           I +C +WL+C
Sbjct: 106 IHLCKLWLTC 115


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = +1

Query: 115 IEMCAMWLSC 144
           I +C +WL+C
Sbjct: 106 IHLCKLWLTC 115


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = +1

Query: 187 QEDYWNWPHASLENCQKAFPQWFQGRKTYT*KSRRFV 297
           ++D  + PHAS+ + +   P++         K  RF+
Sbjct: 421 EDDARHIPHASVTDSENTVPRYLSPDVISALKGVRFI 457


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 253 FQGRKTYT*KSRRFVVNLLIC 315
           F   K+    S  FVVNL IC
Sbjct: 73  FCAAKSLRTPSNMFVVNLAIC 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,305
Number of Sequences: 438
Number of extensions: 1719
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)