Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D09
         (520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    27   1.3  
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ...    27   2.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   6.8  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   9.0  

>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +3

Query: 396 EDNLKILDDL--PSPDVEMQVKSKFLKKLNRQERVVE 500
           EDNL  L +   P    E+ + + FLK+ ++++RVVE
Sbjct: 261 EDNLSALSETFRPFSKRELNLPNTFLKEFDQEKRVVE 297


>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 199

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 390 IDEDNLKILDDLPSPDVEMQVKSKFLKKLNRQERV 494
           I E++  I+ +LP+   E QVK  F+K +   +RV
Sbjct: 51  ISEESKIIVSNLPTDVTEAQVKELFVKSIGPCKRV 85


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = -1

Query: 343 GTRAAADRPPDRPECP-VRPERRAVRSISASKGSRRAPP-GGENSSPKSLDP 194
           GT  +   PP  P  P  RP  R V S+SA       PP  G  SSP +  P
Sbjct: 222 GTPTSTSAPPIPPSIPSSRPPER-VPSLSAPAPPPIPPPSNGTVSSPPNSPP 272


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +3

Query: 360 NKSKTQIGVKIDEDNLK--ILDDLPSPDVEMQVKSKFL 467
           N + T +  + DE   +   + D+   DVE   KSKFL
Sbjct: 797 NSNNTNVSFQTDETQTEDETMSDIHPDDVENHSKSKFL 834


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,086,354
Number of Sequences: 5004
Number of extensions: 15011
Number of successful extensions: 66
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)