Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_D09
(520 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0061 + 483116-483757,483891-484046,484171-484262,484410-48... 35 0.045
07_01_0925 - 7771465-7772195,7772284-7772431,7773706-7774317 31 0.42
04_04_1084 + 30716247-30716345,30716762-30716937,30717755-307179... 31 0.55
02_05_1127 + 34292894-34293284,34293948-34295443 31 0.73
04_01_0462 + 5976706-5976816,5976845-5976988 30 0.97
07_03_0602 + 19881998-19882217,19882303-19882496,19883719-198840... 29 2.2
03_06_0494 + 34319825-34320094 29 3.0
04_04_0021 - 22192869-22192936,22193232-22193298,22193484-221935... 28 5.2
01_06_1585 - 38448403-38448512,38448836-38448916,38449388-384494... 27 6.8
01_01_0273 + 2260746-2260989,2261111-2261216,2262321-2262324 27 6.8
03_05_0968 + 29277122-29277445,29278389-29278505,29278957-292791... 27 9.0
>01_01_0061 +
483116-483757,483891-484046,484171-484262,484410-485076
Length = 518
Score = 34.7 bits (76), Expect = 0.045
Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Frame = -1
Query: 328 ADRPPDRPECPVRP---ERRAVRSISASKG-SRRAPPGGEN-SSPKSLD 197
ADR PD P+ P P E+ ++ +AS+ SRRAPP E SSP S D
Sbjct: 198 ADRAPDHPKIPKSPFPAEKISMSCYTASRAMSRRAPPKEEEPSSPSSDD 246
>07_01_0925 - 7771465-7772195,7772284-7772431,7773706-7774317
Length = 496
Score = 31.5 bits (68), Expect = 0.42
Identities = 25/91 (27%), Positives = 34/91 (37%)
Frame = -1
Query: 334 AAADRPPDRPECPVRPERRAVRSISASKGSRRAPPGGENSSPKSLDPXXXXXXXXXXXGR 155
AAA P RP P R + R +GS R G ++SP ++
Sbjct: 33 AAAANAPSRPPPPPRVAKSLPREQPGGRGSGRGAEGSASASPVAVGDREGKKTSTATQ-- 90
Query: 154 VGFGIGFIGSDLIGDGFARNSFGA*GRVASG 62
G G +G+ AR+ G GR A G
Sbjct: 91 -GGGHASSSPRRLGEKLARDHPGGGGRGAEG 120
>04_04_1084 +
30716247-30716345,30716762-30716937,30717755-30717970,
30718070-30718212,30718682-30718884
Length = 278
Score = 31.1 bits (67), Expect = 0.55
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -1
Query: 331 AADRPPDRPECPVRPERRAVRSISASKGSRRAPPGGENSSPKSLD 197
AA RPP + P RPE RA ++A PPGG + P + D
Sbjct: 183 AAARPP---QAPARPENRA--PLAAQNDGNVQPPGGNLADPANND 222
>02_05_1127 + 34292894-34293284,34293948-34295443
Length = 628
Score = 30.7 bits (66), Expect = 0.73
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -1
Query: 385 TPICVLLLLRS-NRTGTRAAADRPPDRPECPVRPERRA 275
TP C RS +R+ A R P RP P RP RRA
Sbjct: 24 TPTCSAATSRSASRSSRPLAPSRAPGRPRHPPRPTRRA 61
>04_01_0462 + 5976706-5976816,5976845-5976988
Length = 84
Score = 30.3 bits (65), Expect = 0.97
Identities = 16/47 (34%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = +3
Query: 369 KTQIGVKIDEDNLKILDDLPSPDVEMQVKSK-FLKKLNRQERVVEEV 506
KT +G+K++E L +L + S +E + +K FL+ +N Q +++EE+
Sbjct: 31 KTDLGLKMEE--LDLLAMITSAHLEPTLTAKEFLRAINEQSKMLEEI 75
>07_03_0602 +
19881998-19882217,19882303-19882496,19883719-19884039,
19885016-19885244,19885554-19885653,19886413-19886539,
19886603-19886780,19886859-19886917,19887082-19887568,
19887682-19887836,19887930-19888100,19888181-19888270,
19888714-19888872,19888940-19889223,19889435-19889498
Length = 945
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -1
Query: 319 PPDRPECPVRPERRAVRSISASKGSRRAPPGGENSSPK 206
P RPE R R+ V S S +KGS + P + SPK
Sbjct: 863 PNQRPEIEARFARKRVNSPSRNKGSGKPSP-AQQKSPK 899
>03_06_0494 + 34319825-34320094
Length = 89
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/55 (32%), Positives = 22/55 (40%)
Frame = -1
Query: 361 LRSNRTGTRAAADRPPDRPECPVRPERRAVRSISASKGSRRAPPGGENSSPKSLD 197
L+ T R P P+CP P +R V K RR PP G P L+
Sbjct: 20 LQGWETPRREECRIPVVPPQCPAPPRKRPVALPELGK-ERREPPKGGYFQPPDLE 73
>04_04_0021 -
22192869-22192936,22193232-22193298,22193484-22193585,
22193694-22193807,22194156-22194329,22194835-22195266,
22196328-22196759
Length = 462
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 319 PPDRPECPVRPERRAVRSISASKGSRR 239
PP P RP RRAVR +A+ RR
Sbjct: 16 PPAPPRRRARPRRRAVRVAAAASAPRR 42
>01_06_1585 -
38448403-38448512,38448836-38448916,38449388-38449475,
38449571-38449666,38449823-38449879,38449960-38450466,
38450701-38451393,38451612-38451683
Length = 567
Score = 27.5 bits (58), Expect = 6.8
Identities = 17/45 (37%), Positives = 18/45 (40%)
Frame = -1
Query: 346 TGTRAAADRPPDRPECPVRPERRAVRSISASKGSRRAPPGGENSS 212
T RA D P P ERRAV SA + P GE S
Sbjct: 349 TTERARKQADVDTPRRPSTSERRAVNKGSADMTTTHRPSTGERRS 393
>01_01_0273 + 2260746-2260989,2261111-2261216,2262321-2262324
Length = 117
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 325 DRPPDRPECPVRPERRAVRSISASKGSRRAPPGGEN 218
D+PP RP+ P + A R + G RRAP G ++
Sbjct: 71 DQPPPRPQPPAEHKAAAYR---MTGGFRRAPGGADD 103
>03_05_0968 +
29277122-29277445,29278389-29278505,29278957-29279114,
29279678-29279727,29279968-29280161,29280867-29281049,
29281152-29281270,29281383-29281522,29281857-29281937,
29282286-29282389
Length = 489
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 351 LDRNKSKTQIGVKIDEDNLKILDDLPSP 434
+ RN+S +Q G +D D++++ DD P
Sbjct: 457 VSRNESSSQTGQALDSDDIELPDDEDDP 484
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,369,120
Number of Sequences: 37544
Number of extensions: 138336
Number of successful extensions: 723
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -