Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D09
         (520 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.3  
SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)               28   5.3  
SB_33702| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_48172| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_9946| Best HMM Match : IQ (HMM E-Value=0.00018)                     27   7.0  
SB_16177| Best HMM Match : SAM_1 (HMM E-Value=5.1)                     27   9.3  
SB_31219| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_2606| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.3  

>SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 942

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 19/44 (43%), Positives = 29/44 (65%)
 Frame = +3

Query: 387 KIDEDNLKILDDLPSPDVEMQVKSKFLKKLNRQERVVEEVKLVL 518
           K +++  KI  +   P+ + +V++  L KL+RQ RV EEVKLVL
Sbjct: 841 KQEKEKEKIQKEEKEPE-KSKVQT-LLDKLHRQARVEEEVKLVL 882


>SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1280

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
 Frame = -1

Query: 355 SNRTGTRAAADRPPDRPECPVR---PERRA--VRSIS-ASKGSRRAPPGGENSSP 209
           S+  G   A    P R   P R   P  RA   R +S AS+G R APP    SSP
Sbjct: 503 SSSGGASPARTTSPARITSPARASSPAGRASPARGVSPASRGKRPAPPAPRTSSP 557


>SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 1354

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -1

Query: 352 NRTGTRAAADRPPDRPECPVRPERRAVRSISASKGSRRAPPGGENSSPKSLD 197
           +RT + +   +PP  P+  V P+R A  S  ++  SRR P   E   P S+D
Sbjct: 149 HRTSSLSRKIKPPVPPKPKVMPDRAASLSRQSASLSRRIPEHNE-LLPLSVD 199


>SB_33702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 479

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 328 ADRPPDRPECPVRPERRAVRSISASKGSRRAPPGGENSSP 209
           A+ PP RP  P+ P++    S      S+  PP   + SP
Sbjct: 183 ANTPPPRPASPLPPKKSEQGSELGRPPSKPLPPSPRSKSP 222


>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1212

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
 Frame = -1

Query: 319  PPDRPECPVRPERRAVRSISAS--KGSRRAPPGGENSSPK-SLDPXXXXXXXXXXXGRVG 149
            PP RPE P  P+  A+ + S    +    + P G+   PK S+D              V 
Sbjct: 843  PPKRPERPALPKTSALANKSGQLPRAVSTSKPAGKEKHPKASVDDAQMSFLPQIQTTFVN 902

Query: 148  FGIG 137
             G+G
Sbjct: 903  VGVG 906


>SB_48172| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 334 AAADRPPDRPECPVRPERRAVRSISASKGS 245
           A  D+PP RP+   +PER  V  +++S GS
Sbjct: 387 APVDQPPPRPK---KPEREEVPEMNSSSGS 413


>SB_9946| Best HMM Match : IQ (HMM E-Value=0.00018)
          Length = 786

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -1

Query: 364 LLRSNRTGTRAAADRPPD-RPECPVRPERRAVRSISASKGSRRAPPGGENSSPKSLD 197
           L  S +   + +  RP   +P  PV   R    + SASKG   + PG   S+ + +D
Sbjct: 382 LQASGKVSKKKSNSRPKSAKPARPVSSLRLNNEAASASKGPSPSLPGSSRSTERKVD 438


>SB_16177| Best HMM Match : SAM_1 (HMM E-Value=5.1)
          Length = 181

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 348 RLDRNKSKTQIGVKIDEDNLKILDDLPSPDVEMQVKSKF 464
           R +RNK    I VKIDE+ +K   ++   +V +  K  F
Sbjct: 125 RKNRNKDNLSIQVKIDEEIIKSSTEMKLLEVTLDDKLNF 163


>SB_31219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 517

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 17/55 (30%), Positives = 31/55 (56%)
 Frame = +3

Query: 345 VRLDRNKSKTQIGVKIDEDNLKILDDLPSPDVEMQVKSKFLKKLNRQERVVEEVK 509
           VR++  + K+   V  DEDN    DD+ + D   QVKS    ++NR   ++++++
Sbjct: 108 VRIEPLEIKSD-DVGADEDNDD--DDVHNDDDASQVKSALTAEVNRLAEIIDKIE 159


>SB_2606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 393  DEDNLKILDDLPSPDVEMQVKSKFLKKL 476
            DED ++I D   +   E+ VK+K LKKL
Sbjct: 939  DEDTIEIKDTYSNLQQEVDVKTKKLKKL 966


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,728,782
Number of Sequences: 59808
Number of extensions: 131279
Number of successful extensions: 592
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)