Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_D09
(520 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC127876-1|AAI27877.1| 87|Homo sapiens Unknown (protein for IM... 33 0.60
BC146771-1|AAI46772.1| 1649|Homo sapiens CTD-binding SR-like pro... 33 0.79
BC029651-1|AAH29651.1| 1080|Homo sapiens KIAA1542 protein protein. 33 0.79
BC013381-1|AAH13381.1| 530|Homo sapiens KIAA1542 protein protein. 33 0.79
BC004950-1|AAH04950.1| 322|Homo sapiens KIAA1542 protein protein. 33 0.79
AB040975-1|BAA96066.1| 1654|Homo sapiens KIAA1542 protein protein. 33 0.79
BC053992-1|AAH53992.1| 1312|Homo sapiens SR-related CTD-associat... 32 1.0
BC018398-1|AAH18398.1| 483|Homo sapiens Unknown (protein for IM... 32 1.0
AK024444-1|BAB15734.1| 1343|Homo sapiens FLJ00034 protein protein. 32 1.0
AF254411-1|AAF87552.1| 1312|Homo sapiens ser/arg-rich pre-mRNA s... 32 1.0
AL445068-2|CAI22520.1| 366|Homo sapiens protein ( Human DNA seq... 31 2.4
AL050350-5|CAI42513.1| 366|Homo sapiens protein ( Human DNA seq... 31 2.4
X83412-1|CAA58319.1| 171|Homo sapiens mucin protein. 30 5.6
BC063841-1|AAH63841.1| 601|Homo sapiens ubiquilin 4 protein. 29 7.4
BC018403-1|AAH18403.1| 601|Homo sapiens ubiquilin 4 protein. 29 7.4
AY603755-1|AAT80901.1| 3094|Homo sapiens striated muscle prefere... 29 7.4
AL834261-1|CAD38936.1| 377|Homo sapiens hypothetical protein pr... 29 7.4
AL355388-14|CAH72633.1| 601|Homo sapiens ubiquilin 4 protein. 29 7.4
AK023354-1|BAB14539.1| 314|Homo sapiens protein ( Homo sapiens ... 29 7.4
AF188240-1|AAF80171.1| 601|Homo sapiens A1U protein. 29 7.4
AB209566-1|BAD92803.1| 600|Homo sapiens ataxin-1 ubiquitin-like... 29 7.4
AB037718-1|BAA92535.1| 2242|Homo sapiens KIAA1297 protein protein. 29 7.4
AL645608-9|CAI15571.2| 676|Homo sapiens chromosome 1 open readi... 29 9.8
AK123855-1|BAC85711.1| 676|Homo sapiens protein ( Homo sapiens ... 29 9.8
>BC127876-1|AAI27877.1| 87|Homo sapiens Unknown (protein for
IMAGE:40133758) protein.
Length = 87
Score = 33.1 bits (72), Expect = 0.60
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +3
Query: 432 PDVEMQVKSKFLKKLNRQERVVEEVKLVL 518
P + + K +++KKL+ QER VEEVKL +
Sbjct: 1 PGKKRRKKEEYMKKLHMQERAVEEVKLAI 29
>BC146771-1|AAI46772.1| 1649|Homo sapiens CTD-binding SR-like protein
rA9 protein.
Length = 1649
Score = 32.7 bits (71), Expect = 0.79
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3
Query: 426 PSPDVEMQVKSKFLKKLNRQERVVEEVKLVL 518
P E K +++KKL+ QER VEEVKL +
Sbjct: 1548 PRLAAEKTKKEEYMKKLHMQERAVEEVKLAI 1578
>BC029651-1|AAH29651.1| 1080|Homo sapiens KIAA1542 protein protein.
Length = 1080
Score = 32.7 bits (71), Expect = 0.79
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3
Query: 426 PSPDVEMQVKSKFLKKLNRQERVVEEVKLVL 518
P E K +++KKL+ QER VEEVKL +
Sbjct: 979 PRLAAEKTKKEEYMKKLHMQERAVEEVKLAI 1009
>BC013381-1|AAH13381.1| 530|Homo sapiens KIAA1542 protein protein.
Length = 530
Score = 32.7 bits (71), Expect = 0.79
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3
Query: 426 PSPDVEMQVKSKFLKKLNRQERVVEEVKLVL 518
P E K +++KKL+ QER VEEVKL +
Sbjct: 429 PRLAAEKTKKEEYMKKLHMQERAVEEVKLAI 459
>BC004950-1|AAH04950.1| 322|Homo sapiens KIAA1542 protein protein.
Length = 322
Score = 32.7 bits (71), Expect = 0.79
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3
Query: 426 PSPDVEMQVKSKFLKKLNRQERVVEEVKLVL 518
P E K +++KKL+ QER VEEVKL +
Sbjct: 221 PRLAAEKTKKEEYMKKLHMQERAVEEVKLAI 251
>AB040975-1|BAA96066.1| 1654|Homo sapiens KIAA1542 protein protein.
Length = 1654
Score = 32.7 bits (71), Expect = 0.79
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3
Query: 426 PSPDVEMQVKSKFLKKLNRQERVVEEVKLVL 518
P E K +++KKL+ QER VEEVKL +
Sbjct: 1553 PRLAAEKTKKEEYMKKLHMQERAVEEVKLAI 1583
>BC053992-1|AAH53992.1| 1312|Homo sapiens SR-related CTD-associated
factor 1 protein.
Length = 1312
Score = 32.3 bits (70), Expect = 1.0
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +3
Query: 459 KFLKKLNRQERVVEEVKLVL 518
K+LKKL+ QER VEEVKL +
Sbjct: 1206 KYLKKLHTQERAVEEVKLAI 1225
>BC018398-1|AAH18398.1| 483|Homo sapiens Unknown (protein for
IMAGE:3881197) protein.
Length = 483
Score = 32.3 bits (70), Expect = 1.0
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +3
Query: 459 KFLKKLNRQERVVEEVKLVL 518
K+LKKL+ QER VEEVKL +
Sbjct: 377 KYLKKLHTQERAVEEVKLAI 396
>AK024444-1|BAB15734.1| 1343|Homo sapiens FLJ00034 protein protein.
Length = 1343
Score = 32.3 bits (70), Expect = 1.0
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +3
Query: 459 KFLKKLNRQERVVEEVKLVL 518
K+LKKL+ QER VEEVKL +
Sbjct: 1237 KYLKKLHTQERAVEEVKLAI 1256
>AF254411-1|AAF87552.1| 1312|Homo sapiens ser/arg-rich pre-mRNA
splicing factor SR-A1 protein.
Length = 1312
Score = 32.3 bits (70), Expect = 1.0
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +3
Query: 459 KFLKKLNRQERVVEEVKLVL 518
K+LKKL+ QER VEEVKL +
Sbjct: 1206 KYLKKLHTQERAVEEVKLAI 1225
>AL445068-2|CAI22520.1| 366|Homo sapiens protein ( Human DNA
sequence from clone RP1-71D21 on chromosome 6. ).
Length = 366
Score = 31.1 bits (67), Expect = 2.4
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -1
Query: 349 RTGTRAAADRPPDR--PECPVRPERRAVRSISASKGSRRAPPGGENS 215
R+ A RPP P P +P + R ++ + RRAPPGG S
Sbjct: 43 RSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGS 89
>AL050350-5|CAI42513.1| 366|Homo sapiens protein ( Human DNA
sequence from clone RP1-261K5 on chromosome 6q21-22.1
Contains the 3' end of the SLC22A16 gene for solute
carrier family ).
Length = 366
Score = 31.1 bits (67), Expect = 2.4
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -1
Query: 349 RTGTRAAADRPPDR--PECPVRPERRAVRSISASKGSRRAPPGGENS 215
R+ A RPP P P +P + R ++ + RRAPPGG S
Sbjct: 43 RSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGS 89
>X83412-1|CAA58319.1| 171|Homo sapiens mucin protein.
Length = 171
Score = 29.9 bits (64), Expect = 5.6
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -1
Query: 358 RSNRTGTRAAADRPPDRPECPVRPERRAVRSISASKGSRRAP 233
R +R+ A R DR E RP+RR +GS AP
Sbjct: 93 RGSRSSPSADQQRAQDREEEAARPQRRPAAGTGQRRGSAAAP 134
>BC063841-1|AAH63841.1| 601|Homo sapiens ubiquilin 4 protein.
Length = 601
Score = 29.5 bits (63), Expect = 7.4
Identities = 19/70 (27%), Positives = 25/70 (35%)
Frame = -1
Query: 334 AAADRPPDRPECPVRPERRAVRSISASKGSRRAPPGGENSSPKSLDPXXXXXXXXXXXGR 155
+A P P P +P S A GSRR+ GG + P G
Sbjct: 106 SAPSTTPASPATPAQPSTSGSASSDAGSGSRRSSGGGPSPGAGEGSPSATASILSGFGGI 165
Query: 154 VGFGIGFIGS 125
+G G +GS
Sbjct: 166 LGLGSLGLGS 175
>BC018403-1|AAH18403.1| 601|Homo sapiens ubiquilin 4 protein.
Length = 601
Score = 29.5 bits (63), Expect = 7.4
Identities = 19/70 (27%), Positives = 25/70 (35%)
Frame = -1
Query: 334 AAADRPPDRPECPVRPERRAVRSISASKGSRRAPPGGENSSPKSLDPXXXXXXXXXXXGR 155
+A P P P +P S A GSRR+ GG + P G
Sbjct: 106 SAPSTTPASPATPAQPSTSGSASSDAGSGSRRSSGGGPSPGAGEGSPSATASILSGFGGI 165
Query: 154 VGFGIGFIGS 125
+G G +GS
Sbjct: 166 LGLGSLGLGS 175
>AY603755-1|AAT80901.1| 3094|Homo sapiens striated muscle
preferentially expressed protein protein.
Length = 3094
Score = 29.5 bits (63), Expect = 7.4
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = -1
Query: 340 TRAAADRPPDRPEC---PVRPERRAVRSISASKGSRRAPPGGENSSPKSLDP 194
+R A RPPD P P+ P S++ S S PP SS K++ P
Sbjct: 2660 SRPARARPPDSPTSLAPPLAPAAPTPPSVTVSPSSPPTPPSQALSSLKAVGP 2711
>AL834261-1|CAD38936.1| 377|Homo sapiens hypothetical protein
protein.
Length = 377
Score = 29.5 bits (63), Expect = 7.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 364 LLRSNRTGTRAAADRPPDRPECPVRPE 284
++R R A D PP RP PVRP+
Sbjct: 178 VVRKPRASQELAGDAPPPRPPPPVRPD 204
>AL355388-14|CAH72633.1| 601|Homo sapiens ubiquilin 4 protein.
Length = 601
Score = 29.5 bits (63), Expect = 7.4
Identities = 19/70 (27%), Positives = 25/70 (35%)
Frame = -1
Query: 334 AAADRPPDRPECPVRPERRAVRSISASKGSRRAPPGGENSSPKSLDPXXXXXXXXXXXGR 155
+A P P P +P S A GSRR+ GG + P G
Sbjct: 106 SAPSTTPASPATPAQPSTSGSASSDAGSGSRRSSGGGPSPGAGEGSPSATASILSGFGGI 165
Query: 154 VGFGIGFIGS 125
+G G +GS
Sbjct: 166 LGLGSLGLGS 175
>AK023354-1|BAB14539.1| 314|Homo sapiens protein ( Homo sapiens
cDNA FLJ13292 fis, clone OVARC1001180, weakly similar to
UBIQUITIN-LIKE PROTEIN DSK2. ).
Length = 314
Score = 29.5 bits (63), Expect = 7.4
Identities = 19/70 (27%), Positives = 25/70 (35%)
Frame = -1
Query: 334 AAADRPPDRPECPVRPERRAVRSISASKGSRRAPPGGENSSPKSLDPXXXXXXXXXXXGR 155
+A P P P +P S A GSRR+ GG + P G
Sbjct: 106 SAPSTTPASPATPAQPSTSGSASSDAGSGSRRSSGGGPSPGAGEGSPSATASILSGFGGI 165
Query: 154 VGFGIGFIGS 125
+G G +GS
Sbjct: 166 LGLGSLGLGS 175
>AF188240-1|AAF80171.1| 601|Homo sapiens A1U protein.
Length = 601
Score = 29.5 bits (63), Expect = 7.4
Identities = 19/70 (27%), Positives = 25/70 (35%)
Frame = -1
Query: 334 AAADRPPDRPECPVRPERRAVRSISASKGSRRAPPGGENSSPKSLDPXXXXXXXXXXXGR 155
+A P P P +P S A GSRR+ GG + P G
Sbjct: 106 SAPSTTPASPATPAQPSTSGSASSDAGSGSRRSSGGGPSPGAGEGSPSATASILSGFGGI 165
Query: 154 VGFGIGFIGS 125
+G G +GS
Sbjct: 166 LGLGSLGLGS 175
>AB209566-1|BAD92803.1| 600|Homo sapiens ataxin-1 ubiquitin-like
interacting protein variant protein.
Length = 600
Score = 29.5 bits (63), Expect = 7.4
Identities = 19/70 (27%), Positives = 25/70 (35%)
Frame = -1
Query: 334 AAADRPPDRPECPVRPERRAVRSISASKGSRRAPPGGENSSPKSLDPXXXXXXXXXXXGR 155
+A P P P +P S A GSRR+ GG + P G
Sbjct: 105 SAPSTTPASPATPAQPSTSGSASSDAGSGSRRSSGGGPSPGAGEGSPSATASILSGFGGI 164
Query: 154 VGFGIGFIGS 125
+G G +GS
Sbjct: 165 LGLGSLGLGS 174
>AB037718-1|BAA92535.1| 2242|Homo sapiens KIAA1297 protein protein.
Length = 2242
Score = 29.5 bits (63), Expect = 7.4
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = -1
Query: 340 TRAAADRPPDRPEC---PVRPERRAVRSISASKGSRRAPPGGENSSPKSLDP 194
+R A RPPD P P+ P S++ S S PP SS K++ P
Sbjct: 1808 SRPARARPPDSPTSLAPPLAPAAPTPPSVTVSPSSPPTPPSQALSSLKAVGP 1859
>AL645608-9|CAI15571.2| 676|Homo sapiens chromosome 1 open reading
frame 170 protein.
Length = 676
Score = 29.1 bits (62), Expect = 9.8
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = -1
Query: 343 GTRAAADRPPDRPECPVR-PERRAVRSISASKGSRR-APPGGENSSP 209
G + RPPD P P R P R+ R++ A G A + SP
Sbjct: 47 GHSTGSQRPPDSPGAPPRSPSRKKRRAVGAKGGGHTGASASAQTGSP 93
>AK123855-1|BAC85711.1| 676|Homo sapiens protein ( Homo sapiens
cDNA FLJ41861 fis, clone NTONG2008672. ).
Length = 676
Score = 29.1 bits (62), Expect = 9.8
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = -1
Query: 343 GTRAAADRPPDRPECPVR-PERRAVRSISASKGSRR-APPGGENSSP 209
G + RPPD P P R P R+ R++ A G A + SP
Sbjct: 47 GHSTGSQRPPDSPGAPPRSPSRKKRRAVGAKGGGHTGASASAQTGSP 93
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,382,430
Number of Sequences: 237096
Number of extensions: 660625
Number of successful extensions: 3135
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 2966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3135
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4933413474
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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