Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_D09
(520 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81522-5|CAD98731.1| 663|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z81522-4|CAB04233.1| 771|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical pr... 29 2.0
U40028-9|AAA81120.1| 256|Caenorhabditis elegans Serpentine rece... 29 2.0
U27312-7|AAA68251.1| 71|Caenorhabditis elegans Hypothetical pr... 28 4.6
AC024753-10|AAF60454.1| 71|Caenorhabditis elegans Nematode spe... 28 4.6
AF036688-6|AAB88312.1| 71|Caenorhabditis elegans Hypothetical ... 27 6.1
Z81067-4|CAB02976.2| 632|Caenorhabditis elegans Hypothetical pr... 27 8.0
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 27 8.0
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 27 8.0
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 27 8.0
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 27 8.0
>Z81522-5|CAD98731.1| 663|Caenorhabditis elegans Hypothetical
protein F32B4.4b protein.
Length = 663
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Frame = -1
Query: 355 SNRTGTRAAADRPPDR----PECPVRPERRAVRSISASKGSRRAPPGGENS 215
SNR R A PP R P+R RA R +S+ S R GG S
Sbjct: 171 SNRDSRRTIAAAPPARTSRMARSPLRAPLRAARGSESSRSSTRGGGGGGES 221
>Z81522-4|CAB04233.1| 771|Caenorhabditis elegans Hypothetical
protein F32B4.4a protein.
Length = 771
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Frame = -1
Query: 355 SNRTGTRAAADRPPDR----PECPVRPERRAVRSISASKGSRRAPPGGENS 215
SNR R A PP R P+R RA R +S+ S R GG S
Sbjct: 279 SNRDSRRTIAAAPPARTSRMARSPLRAPLRAARGSESSRSSTRGGGGGGES 329
>Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical
protein C27H6.1 protein.
Length = 1657
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 355 SNRTGTRAAADRPPDRPECPVRPE 284
S+ TGT A A PP RPE P + E
Sbjct: 678 SSSTGTSAPARPPPARPEAPKKDE 701
>U40028-9|AAA81120.1| 256|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 39 protein.
Length = 256
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -1
Query: 151 GFGIGFIGSDLIGDGFARNSFGA*GRVASGSTIRTGGAADAPLTA 17
G G+G +G G G A G VA+G T AA+APL A
Sbjct: 100 GAGLGGMGGYGGGFGAASRGISVGGNVATGVTPYGANAANAPLAA 144
>U27312-7|AAA68251.1| 71|Caenorhabditis elegans Hypothetical
protein F26A1.10 protein.
Length = 71
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -1
Query: 151 GFGIGFIGSDLIGDGFARNSFGA*GRVASGSTIRTGGAAD 32
G+G G++G++ G+AR + G SG+ + G +
Sbjct: 12 GYGSGYMGANASSSGYAREDYAQGGAGGSGNQNQGGSGGN 51
>AC024753-10|AAF60454.1| 71|Caenorhabditis elegans Nematode
specific peptide family,group d protein 8 protein.
Length = 71
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -1
Query: 151 GFGIGFIGSDLIGDGFARNSFGA*GRVASGSTIRTGGAAD 32
G+G G++GS+ G+AR + G S + + G +
Sbjct: 12 GYGSGYMGSNASSSGYAREDYAQGGNGGSNNNQQQGSGGN 51
>AF036688-6|AAB88312.1| 71|Caenorhabditis elegans Hypothetical
protein C24D10.7 protein.
Length = 71
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = -1
Query: 151 GFGIGFIGSDLIGDGFARNSFGA*GRVASGSTIRTGGAAD 32
G+G G++GS+ G+AR + G G G +
Sbjct: 12 GYGSGYMGSNASSSGYAREDYAQGGNGGGGQQQNQGSGGN 51
>Z81067-4|CAB02976.2| 632|Caenorhabditis elegans Hypothetical
protein F23A7.5 protein.
Length = 632
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -1
Query: 310 RPECPVRPERRAVRSISASKGSRRAPPGGEN 218
RP+ VR ER AVR S+S+GS P E+
Sbjct: 441 RPQDMVRRERSAVRYRSSSRGSPLYEPDEED 471
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 27.1 bits (57), Expect = 8.0
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -1
Query: 358 RSNRTGTRAAADRPPDRPECPVR--PERRAVRSISASKGSRRAPPGGENSSPK 206
RS+R+ +R+ DR +R R P RR RS + R+PP +SP+
Sbjct: 94 RSSRSRSRSPRDRDRERRRRRSRSPPPRRRSRSGGDRRRRERSPPSMVPNSPQ 146
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 346 TGTRAAADRPPDRPECPVRPERRAVRSISASKGSRRAPP 230
T A A RPP P+ P P +A + + + +APP
Sbjct: 583 TSEAATAARPPSTPQAPQAPPVQAAPAPVQAPQAPQAPP 621
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 27.1 bits (57), Expect = 8.0
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -1
Query: 358 RSNRTGTRAAADRPPDRPECPVR--PERRAVRSISASKGSRRAPPGGENSSPK 206
RS+R+ +R+ DR +R R P RR RS + R+PP +SP+
Sbjct: 94 RSSRSRSRSPRDRDRERRRRRSRSPPPRRRSRSGGDRRRRERSPPSMVPNSPQ 146
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 346 TGTRAAADRPPDRPECPVRPERRAVRSISASKGSRRAPP 230
T A A RPP P+ P P +A + + + +APP
Sbjct: 583 TSEAATAARPPSTPQAPQAPPVQAAPAPVQAPQAPQAPP 621
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,314,058
Number of Sequences: 27780
Number of extensions: 96190
Number of successful extensions: 560
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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