Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_D08
(601 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 195 4e-51
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 50 2e-07
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 28 1.2
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar... 26 4.8
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 6.4
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 25 8.5
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 25 8.5
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 25 8.5
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 25 8.5
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 195 bits (476), Expect = 4e-51
Identities = 92/165 (55%), Positives = 121/165 (73%)
Frame = +3
Query: 105 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHL 284
K+ YF K+ L ++Y F+V DNV SQQM +R LRG + ++MGKNTM+R+A++ +
Sbjct: 8 KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67
Query: 285 ETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG 464
P LE+LLP ++GNVGFVFT DL +VR+ ++ N + APARP AIAPL V +PA NTG
Sbjct: 68 NDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTG 127
Query: 465 LGPEKTSFFQALSIPTKISKGTIEIITDVHILKPGDKVGASEATL 599
+ P KTSFFQAL IPTKI++GTIEI +DVH++ KVG SEATL
Sbjct: 128 MEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATL 172
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 50.4 bits (115), Expect = 2e-07
Identities = 53/191 (27%), Positives = 84/191 (43%), Gaps = 16/191 (8%)
Frame = +3
Query: 75 KMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNT 254
K G E KA F + Q LD + +I N+ + +++IR +G S + MGK
Sbjct: 17 KKGHEGKAA----LFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDWKG-SRIFMGKTK 71
Query: 255 MMRKAIKDHLETNPA--LEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAP-ARPGAI 425
+M KA+ E A + KL + G VG +FT +V E+ VQ AR GA+
Sbjct: 72 VMAKALGHTPEEEHAENVSKLTKLLHGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAV 130
Query: 426 APLSVVIPA----HNTGLGPEKTSFF---------QALSIPTKISKGTIEIITDVHILKP 566
AP + VIPA G P + + L +PT + G + ++ D +
Sbjct: 131 APFTHVIPAGPVYSRAGQIPVEDDILLTHTLEPQVRQLGMPTVLKNGVVTLLADFPLCTE 190
Query: 567 GDKVGASEATL 599
G ++ + + L
Sbjct: 191 GQQLDSRQTRL 201
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 541 IISIVPFEILVGMERAWKKEVFSGPRPVL*AGMTTDNGAMAP 416
IIS P + L+G+ AW E S R + T+ +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330
>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
Byr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 57 PYFTQSKMGREDKATWKSNY 116
PYF Q+ M D A+W SN+
Sbjct: 318 PYFQQALMINVDLASWASNF 337
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 16 GLCVFVLSLNFSEVPTSLNPRWVGRTRLPGS 108
GLC + L+ + ++NP ++GR +LP +
Sbjct: 1971 GLCQSPILLDAPTIFVTMNPGYLGRFKLPSN 2001
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -1
Query: 475 SGPRPVL*AGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRV 347
+G PV + + G++ P AGAW L N L T ++
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKM 180
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 231 IVLMGKNTMMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLV 365
I L+G N ++ DH++ +P ++ P+I V ++GDLV
Sbjct: 401 IPLLGMNKVILAG--DHMQLSPNVQSKRPYISMFERLVKSQGDLV 443
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 225 HSIVLMGKNTMMRKAIKDHLE 287
HS++ KNT KA+ HLE
Sbjct: 408 HSLLQKSKNTSSTKALTSHLE 428
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 251 HHDEESHQGPS*NKSSSRKTASSHQG 328
HH+ + S S+SRK A SH G
Sbjct: 431 HHNNDKRAHVSRRHSTSRKIAQSHTG 456
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,732,279
Number of Sequences: 5004
Number of extensions: 58228
Number of successful extensions: 193
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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