Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D07
         (209 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.14 |vps24||vacuolar sorting protein Vps24|Schizosaccharo...    28   0.15 
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    24   2.4  
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    23   4.2  
SPAPB1A10.03 |nxt1||mRNA export receptor Nxt1|Schizosaccharomyce...    23   4.2  
SPBC1734.09 |||NST UDP-N-acetylglucosamine transporter|Schizosac...    23   5.5  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    23   5.5  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    22   9.6  
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p...    22   9.6  

>SPAC9E9.14 |vps24||vacuolar sorting protein
           Vps24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 28.3 bits (60), Expect = 0.15
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 23  PEDENNKWVRAFRKENSD*NKTKLNFSKTKHLKAIRNY*QVNLKWLSIQI-ITN 181
           P+++N KW    RKE    ++      +  HLKA R   +V LK L+ Q  ITN
Sbjct: 13  PQEQNRKWQSIIRKEQRQLDR------QVYHLKAGRKKAEVQLKQLAKQSDITN 60


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 117 KCFVLLKLSLVLFQSEFSFLKARTHLLF 34
           KC  L  LS++L    FS    R HL +
Sbjct: 363 KCICLTDLSVILLSGSFSRNLERVHLSY 390


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 33  KTINGYVLLGRKTQIEIKPNSTSVRR 110
           +T+NGY + GR+ ++E K    +  R
Sbjct: 261 QTLNGYEINGRRLRVEWKRQLPAAER 286


>SPAPB1A10.03 |nxt1||mRNA export receptor Nxt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 118 ESNSQLLTSEPEMVIDSDNYEQFFESLG 201
           E  S L+ ++PE+        QFFE  G
Sbjct: 123 EKMSSLVVNDPELAQKVGRLRQFFEKYG 150


>SPBC1734.09 |||NST UDP-N-acetylglucosamine
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 111 FVLLKLSLVLFQSEFS-FLKARTHLLFSSS 25
           FV L LSL+LF++E    +K    L+F SS
Sbjct: 268 FVSLCLSLILFENEMGPAVKFGALLVFGSS 297


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 86  TKLNFSKTKHLKAIRNY*QVNLKWLSI 166
           T+L + K + +  +R +  +  KWLSI
Sbjct: 282 TRLPYEKGEFINFVRYHPSITPKWLSI 308


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 126 IAFKCFVLLKLSLVLFQSEFSFLKARTHLLF 34
           +A + F LL LSL+    EF F + R+   F
Sbjct: 240 LAHQKFYLLHLSLLREYLEFEFQECRSTFTF 270


>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 113 HLKAIRNY*QVNLKWLSIQIITNNSLNHWER 205
           HL+++    Q+N K +S ++ T    + WER
Sbjct: 123 HLRSVCERIQLNGKPISQELFTKYFFDVWER 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 851,148
Number of Sequences: 5004
Number of extensions: 12669
Number of successful extensions: 31
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 49
effective length of database: 2,117,282
effective search space used: 42345640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)