Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D07
         (209 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0230 - 14572854-14574632                                         27   1.6  
03_05_0833 - 28045442-28045881,28045961-28046063,28046172-280462...    26   3.6  

>08_02_0230 - 14572854-14574632
          Length = 592

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 2   ARGAIAPPEDENNKWVRAFRKENSD 76
           A  A+ PP  E+ +W RA+ K N D
Sbjct: 531 ASAAVLPPPAEDTRWDRAWYKYNCD 555


>03_05_0833 -
           28045442-28045881,28045961-28046063,28046172-28046203,
           28046299-28046516,28046606-28046721,28047757-28048000,
           28048423-28048510,28048596-28048667,28048758-28048869,
           28049047-28049115,28049627-28049685,28050067-28050325
          Length = 603

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 91  FGFISI*VFLPKSTYPFIVFVLWW 20
           +  ISI VF  K   P+ VF+L+W
Sbjct: 105 YKLISIFVFNLKQAQPYSVFILYW 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,226,145
Number of Sequences: 37544
Number of extensions: 69724
Number of successful extensions: 163
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 14,793,348
effective HSP length: 49
effective length of database: 12,953,692
effective search space used: 259073840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)