Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D07
         (209 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ297847-1|CAC16732.1|  619|Caenorhabditis elegans FOG-1 protein...    26   4.2  
AJ297846-1|CAC16731.1|  619|Caenorhabditis elegans FOG-1 protein...    26   4.2  
AC024810-12|AAK68519.1|  619|Caenorhabditis elegans Feminization...    26   4.2  
AF036692-6|AAB88328.1|  397|Caenorhabditis elegans Hypothetical ...    25   5.6  
Z82058-1|CAB04862.2|  352|Caenorhabditis elegans Hypothetical pr...    25   7.3  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    25   9.7  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    25   9.7  
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical...    25   9.7  

>AJ297847-1|CAC16732.1|  619|Caenorhabditis elegans FOG-1 protein
          protein.
          Length = 619

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 23 PEDENNKWVRAFRKENS 73
          P   N KW R +++ENS
Sbjct: 3  PSGHNEKWTRGYQRENS 19


>AJ297846-1|CAC16731.1|  619|Caenorhabditis elegans FOG-1 protein
          protein.
          Length = 619

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 23 PEDENNKWVRAFRKENS 73
          P   N KW R +++ENS
Sbjct: 3  PSGHNEKWTRGYQRENS 19


>AC024810-12|AAK68519.1|  619|Caenorhabditis elegans Feminization
          of germline protein1, isoform b protein.
          Length = 619

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 23 PEDENNKWVRAFRKENS 73
          P   N KW R +++ENS
Sbjct: 3  PSGHNEKWTRGYQRENS 19


>AF036692-6|AAB88328.1|  397|Caenorhabditis elegans Hypothetical
           protein C44B12.5 protein.
          Length = 397

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -3

Query: 129 RIAFKCFVLLKLSLVLFQSEFSFLKARTHLLFSSSGGA 16
           R +F+CF+    S+    S F FLK    L+F S GGA
Sbjct: 6   RSSFQCFLFFPRSINSDISTFIFLKLFL-LIFFSVGGA 42


>Z82058-1|CAB04862.2|  352|Caenorhabditis elegans Hypothetical
           protein T27C5.1 protein.
          Length = 352

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 165 IDNHFRFTC**LRIAFKCFVLLKLSLVL 82
           ++N FR T    RI + C +L  L LVL
Sbjct: 138 LNNRFRITNNRSRIVYNCVILFPLILVL 165


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +2

Query: 14   IAPPEDENNKWVRAFRKENSD*NKTKLNFSKTKHLKAIRNY*QVNLKWLSIQI 172
            +  P   N  W   F   N++  +     SK  H K IR+   + L WL+ +I
Sbjct: 2494 VESPVGVNISW---FSMNNAENPRLVFGASKQPHAKEIRHISDMKLDWLTQKI 2543


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +2

Query: 14   IAPPEDENNKWVRAFRKENSD*NKTKLNFSKTKHLKAIRNY*QVNLKWLSIQI 172
            +  P   N  W   F   N++  +     SK  H K IR+   + L WL+ +I
Sbjct: 2494 VESPVGVNISW---FSMNNAENPRLVFGASKQPHAKEIRHISDMKLDWLTQKI 2543


>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
           protein Y26D4A.9 protein.
          Length = 1435

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 106 DETLESNSQLLTSEPEMVIDSDNYEQFFESL 198
           +ET E     LT+  + + +SD+ E+F E+L
Sbjct: 126 EETGEKQQAFLTTLNKKLYESDDKEEFIETL 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,699,001
Number of Sequences: 27780
Number of extensions: 69643
Number of successful extensions: 197
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 12,740,198
effective HSP length: 49
effective length of database: 11,378,978
effective search space used: 227579560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)