Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D06
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al...    68   7e-13
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    28   0.74 
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    27   1.7  
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    27   2.3  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    26   3.0  
SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1 |Schizo...    26   4.0  
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz...    26   4.0  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    25   5.2  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    25   6.9  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   9.1  

>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
           subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 68.1 bits (159), Expect = 7e-13
 Identities = 34/86 (39%), Positives = 54/86 (62%)
 Frame = +3

Query: 261 KKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINNPDVFKNPHSDTYIAFGEAKIEDLSQ 440
           +KA+K++ KLGLK V+G+ RV +R+ KNIL +IN P V+K+  ++ YI  G+  +ED++ 
Sbjct: 25  EKAQKLIQKLGLKRVEGITRVAMRRPKNILLIINEPIVYKS-SNNAYIVLGKVTVEDMAA 83

Query: 441 QATMAAAERFKAPETAAAGNDTVATG 518
           QA      + +A ET      T  +G
Sbjct: 84  QARAFNESQKQATETKEEAAITEESG 109


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 28.3 bits (60), Expect = 0.74
 Identities = 18/78 (23%), Positives = 31/78 (39%)
 Frame = +3

Query: 69  ELTELDKATASMTEKRKEETAXXXXXXXXTIPELEDAGAPGAGGISNPIAGIDIVSKAKQ 248
           E   ++   + +  K  EE          T+P       P AGG     AG +  S A++
Sbjct: 35  EAERVESLISELNGKNIEELIAAGNEKLSTVPSAGAVATPAAGG----AAGAEATSAAEE 90

Query: 249 SRGEKKARKIMSKLGLKL 302
           ++ E+ A +    +G  L
Sbjct: 91  AKEEEAAEESDEDMGFGL 108


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -2

Query: 150 LNHCLRKQSLPYVSPSLMQWLYRVLLVQACLDFL*QSDNSF 28
           +   LR+ S  Y+  + + W+Y+  L+ AC      SD+++
Sbjct: 414 IQQSLREMSATYILNNEINWIYQEALLYACCSVDAASDDTY 454


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 20/85 (23%), Positives = 37/85 (43%)
 Frame = +3

Query: 54  NPNMPELTELDKATASMTEKRKEETAXXXXXXXXTIPELEDAGAPGAGGISNPIAGIDIV 233
           +P  P   EL+ +T+    K  E ++         + + E  G+     +S+ IA +D  
Sbjct: 231 SPQSPVKRELNDSTSP--SKLSESSSSLTGSSSALLSQSEFLGS--VPSLSDSIATVDPF 286

Query: 234 SKAKQSRGEKKARKIMSKLGLKLVQ 308
              +    ++KAR ++    LKL Q
Sbjct: 287 FSFESFETDEKARSLLMDASLKLPQ 311


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +3

Query: 27  KRNYHF-VTKNPNMPELTELDKATASMTEKRKEETAXXXXXXXXTIPELED 176
           KRN     TK+  MP  T+L     +MT+   EE            P+LED
Sbjct: 328 KRNARSQATKDACMPNYTKLKAYERNMTDASPEEKQQFRIKLLNQFPKLED 378


>SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 246

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 198 PLPQVRLHLQVPGWCHLNHCLRKQSLPYV 112
           P P  ++ +  PG C  + C +++  PYV
Sbjct: 134 PFPHSKIIIVSPGICTKDICFKREQEPYV 162


>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 669

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 21  FYKRNY-HFVTKNPNMPELTELDKATASMTEKRKE 122
           FY++ Y H   KNPN  +L +     A   EKR++
Sbjct: 588 FYEKRYSHTHQKNPNFVKLADAMGIKALRVEKRED 622


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 15  SNFYKRNYHFVTKNPNMPELTELDK 89
           +N Y+ N+HF TK   M  + EL K
Sbjct: 111 TNLYELNHHFGTKEEFMELIQELHK 135


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 454 AIVACCDRSSIFASPNAM 401
           AI ACC   ++F +PNA+
Sbjct: 168 AIYACCMALTVFINPNAL 185


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 138 LRKQSLPYVSPSLMQWLYRVLLVQACLDFL 49
           L + S P V   L ++  RVLLVQ+   FL
Sbjct: 253 LSRTSSPVVEKKLKRYYIRVLLVQSITFFL 282


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 13/34 (38%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = +3

Query: 231  VSKAK-QSRGEKKARKIMSKLGLKLVQGVNRVTI 329
            ++KA+ + R EK+ R+IMS+   KL++G  + +I
Sbjct: 1233 IAKAENEERFEKEKRRIMSEDRDKLIRGRQKTSI 1266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,101,908
Number of Sequences: 5004
Number of extensions: 41537
Number of successful extensions: 137
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)