Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_D06
(526 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098 108 2e-24
01_07_0123 + 41206782-41206844,41207701-41207782,41208587-412087... 108 2e-24
08_02_0952 - 22981116-22981268,22981930-22981974,22982052-229821... 30 1.3
06_03_0813 - 24853119-24854480,24854711-24855442,24855556-248559... 29 2.3
10_08_0171 + 15404117-15405598 28 4.0
03_06_0090 + 31570588-31570710,31570962-31571080,31572215-315722... 27 7.0
12_02_0992 + 25083397-25083537,25084198-25084228,25084971-250851... 27 9.2
06_03_0736 - 23989881-23990483,23991475-23991489 27 9.2
06_03_0145 - 17226442-17226540,17226740-17226844,17227914-17228261 27 9.2
04_04_1498 + 34002677-34003104,34004427-34004532,34004643-340048... 27 9.2
03_02_0624 + 9935479-9935619,9935780-9935887 27 9.2
>03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098
Length = 221
Score = 108 bits (260), Expect = 2e-24
Identities = 49/78 (62%), Positives = 65/78 (83%)
Frame = +3
Query: 240 AKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINNPDVFKNPHSDTYIAFGEA 419
+KQSR EKK+RK M KLG+K V GV+R+TI+++KNILFV++ PDVFK+P S+TY+ FGEA
Sbjct: 75 SKQSRSEKKSRKAMMKLGMKPVTGVSRITIKRAKNILFVVSKPDVFKSPTSETYVIFGEA 134
Query: 420 KIEDLSQQATMAAAERFK 473
KIEDLS Q AA++F+
Sbjct: 135 KIEDLSSQLQAQAAQQFR 152
>01_07_0123 +
41206782-41206844,41207701-41207782,41208587-41208717,
41208758-41209147
Length = 221
Score = 108 bits (260), Expect = 2e-24
Identities = 60/108 (55%), Positives = 73/108 (67%), Gaps = 19/108 (17%)
Frame = +3
Query: 216 AGIDIVSKAKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKN----------------- 344
AG D ++KQSR EKK+RK M KLG+K + GV+RVTI+KSKN
Sbjct: 50 AGGDASGRSKQSRSEKKSRKAMQKLGMKTITGVSRVTIKKSKNAHRIVIYHCILLNFSLH 109
Query: 345 --ILFVINNPDVFKNPHSDTYIAFGEAKIEDLSQQATMAAAERFKAPE 482
ILFVI+ PDVFK+P+SDTY+ FGEAKIEDLS Q AAE+FKAP+
Sbjct: 110 YQILFVISKPDVFKSPNSDTYVIFGEAKIEDLSSQLQTQAAEQFKAPD 157
>08_02_0952 -
22981116-22981268,22981930-22981974,22982052-22982153,
22983262-22983468,22984783-22985042,22985338-22985442,
22986244-22986247,22986877-22986962,22987022-22987064
Length = 334
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -1
Query: 397 VSECGFLKTSGLLITKSMFFDFLIVTLFTPCTSLRPSL 284
V + G L SG +TK++FF+FL + T+L SL
Sbjct: 236 VGDFGILVRSGFTVTKALFFNFLSALVALAGTALALSL 273
>06_03_0813 -
24853119-24854480,24854711-24855442,24855556-24855962,
24856091-24856359,24856681-24856733,24857019-24857078,
24857309-24857363,24858080-24858155,24858225-24858801
Length = 1196
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/59 (32%), Positives = 25/59 (42%)
Frame = +3
Query: 108 EKRKEETAXXXXXXXXTIPELEDAGAPGAGGISNPIAGIDIVSKAKQSRGEKKARKIMS 284
E KEE +I +E+ G GA + + G S SRG AR+IMS
Sbjct: 589 ESEKEEEERMSVIPSGSIRMMEEDGGAGAPSSEDTVGGSGSGSGRGSSRGGGGAREIMS 647
>10_08_0171 + 15404117-15405598
Length = 493
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +3
Query: 225 DIVSKAKQSRGEKKARKIMSKLGLKLVQGVNRVTI 329
+I + A++ + KKARK+M + G+K V G + + +
Sbjct: 412 NIYAVARRWQEAKKARKVMEERGVKKVPGFSEIDV 446
>03_06_0090 +
31570588-31570710,31570962-31571080,31572215-31572284,
31572544-31573492,31574789-31575699
Length = 723
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 121 KRLLPQTVIQMTPSRNLKMQAHLGQGVFLTPSQALISCPKQSSLV 255
++ L +TVI P +K AH G V T ++ L + +S++
Sbjct: 370 QKALLETVIANLPEETIKSNAHTGTAVGATTARVLFGLLRTTSIL 414
>12_02_0992 +
25083397-25083537,25084198-25084228,25084971-25085139,
25085228-25085291,25085408-25085474,25086543-25086586,
25086835-25086922,25087079-25087238,25087659-25087779,
25087859-25087942,25088043-25088162,25088689-25088901,
25088995-25089054,25089144-25089262,25089407-25089465,
25089585-25089919
Length = 624
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +2
Query: 254 WREEGAQNHEQTWPQACTRCKQSYNKEIKEHTLCDQQS*CLQ 379
W ++ +HE C C++ +IK TL D + CL+
Sbjct: 340 WMQKYCPSHEDDGTPRCCSCERMEPMDIKYITLDDGRKLCLE 381
>06_03_0736 - 23989881-23990483,23991475-23991489
Length = 205
Score = 27.1 bits (57), Expect = 9.2
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +3
Query: 291 GLKLVQGVNRVTIRKSKNILFVINNPDVFKNPHSDTYIAFG-EAKIEDLSQQATMAAAER 467
G + VQ SK + +N+ D H D +A A+ ++ ++ A AA E
Sbjct: 126 GRRRVQAKKTTEKAASKAAIVPVNDDDDDDQAHEDVVVAAPVAAEHQETAEAAAAAAGEE 185
Query: 468 FKAPE 482
+APE
Sbjct: 186 EEAPE 190
>06_03_0145 - 17226442-17226540,17226740-17226844,17227914-17228261
Length = 183
Score = 27.1 bits (57), Expect = 9.2
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = +3
Query: 96 ASMTEKRKEETAXXXXXXXXTIPELEDAGAPGAGGISNPIAGIDIVSKAKQSRGEKKARK 275
AS+ +E A + L DA A G +A + I+ + ++ RGE KAR
Sbjct: 49 ASLAAGAAKEIADEAGFFGSSGASLRDAAADLVGATLAAVA-LAILRRLRRPRGEGKARD 107
Query: 276 IMSKLGLKLVQG 311
+ G+ + G
Sbjct: 108 ADHRAGISMSSG 119
>04_04_1498 +
34002677-34003104,34004427-34004532,34004643-34004811,
34004901-34005088,34005644-34005763
Length = 336
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 183 APGAGGISNPIAGIDIVSKAKQSRGEKK 266
APG GG ++P A + K+S ++K
Sbjct: 121 APGTGGTASPTAAVQAAGDNKESASKRK 148
>03_02_0624 + 9935479-9935619,9935780-9935887
Length = 82
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3
Query: 398 SVRVWVLEDIRIVDHKEYVL 339
S+R++ DI +VDHK Y+L
Sbjct: 32 SIRIFRYSDIPLVDHKRYLL 51
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,393,687
Number of Sequences: 37544
Number of extensions: 303658
Number of successful extensions: 970
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -