Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D05
         (502 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869     81   5e-16
02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116     81   6e-16
05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650     80   1e-15
06_03_1314 + 29266320-29266346,29266463-29266556,29266663-292667...    29   1.6  
09_02_0478 - 9749306-9749382,9749543-9749659,9749711-9750398,975...    29   2.8  
08_02_0784 + 21183223-21183654,21183892-21184065,21184158-211842...    28   4.8  
11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,223...    27   6.4  
02_02_0578 + 11745811-11746013,11749902-11750241,11750325-117505...    27   6.4  
01_06_0147 + 26997641-26997688,26997783-26997857,26997966-269980...    27   8.5  

>01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869
          Length = 145

 Score = 81.0 bits (191), Expect = 5e-16
 Identities = 48/126 (38%), Positives = 74/126 (58%), Gaps = 8/126 (6%)
 Frame = +3

Query: 78  LNWMIIRNNNAFLVKK---ANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKG 248
           L W +++ NN+FLVK+    N K  FSKEPNN+ N++SY+++GL +KK V V     ++ 
Sbjct: 8   LVWELVKKNNSFLVKQFGNGNAKVQFSKEPNNLYNVHSYKHSGLANKKTVTVQPASGKET 67

Query: 249 FTIV-YKKAKATNKPV----KNIIRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRA 413
             ++   K +  NKP     K+++R+ F+  A+      K  +  N+YR DLTK  L R 
Sbjct: 68  AVVLSTTKTEKQNKPASLYHKSVMRKEFRKMAK----AVKNQVSDNYYRPDLTKPALARL 123

Query: 414 SAILRS 431
           SA+ RS
Sbjct: 124 SAVYRS 129


>02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116
          Length = 147

 Score = 80.6 bits (190), Expect = 6e-16
 Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 4/122 (3%)
 Frame = +3

Query: 78  LNWMIIRNNNAFLVKK---ANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKG 248
           L W I++ NN FLVK+   +N K  F+KEPNN+ N++SY+++GL +KK V +  +  +  
Sbjct: 8   LFWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGGKDA 67

Query: 249 FTIV-YKKAKATNKPVKNIIRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRASAIL 425
             ++   K K  N P K   +   +   R+     K  +  N+YR DLTK  L R S++ 
Sbjct: 68  AVVLSTTKTKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVY 127

Query: 426 RS 431
           RS
Sbjct: 128 RS 129


>05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650
          Length = 147

 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 4/122 (3%)
 Frame = +3

Query: 78  LNWMIIRNNNAFLVKK---ANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKG 248
           L W I++ NN FLVK+   +N K  F+KEPNN+ N++SY+++GL +KK V +  +  +  
Sbjct: 8   LIWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGVKDA 67

Query: 249 FTIV-YKKAKATNKPVKNIIRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRASAIL 425
             ++   K K  N P K   +   +   R+     K  +  N+YR DLTK  L R S++ 
Sbjct: 68  AVVLSTTKTKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVY 127

Query: 426 RS 431
           RS
Sbjct: 128 RS 129


>06_03_1314 +
           29266320-29266346,29266463-29266556,29266663-29266712,
           29266798-29266847,29266945-29267053,29267135-29267195,
           29267291-29267343,29267629-29267721,29268091-29268166,
           29268401-29268508,29268596-29268840
          Length = 321

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = -3

Query: 311 TTDNVLYRFIGCLGLLINYREALSVRILNDTDGFLMDQAIVSIRVEVSHIV---GFFAER 141
           T + V+  F GC   L+    A  V  L+D D F+  Q I++    V+H++   G F  +
Sbjct: 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAALTIVTHVLKVGGKFVAK 166

Query: 140 LF 135
           +F
Sbjct: 167 IF 168


>09_02_0478 -
           9749306-9749382,9749543-9749659,9749711-9750398,
           9750521-9751161,9751336-9751462
          Length = 549

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 353 LGFEKRPPRSSFEWTTDNVLYRFIGC 276
           L   K PP+ S++WT  N++Y  + C
Sbjct: 243 LAESKIPPQFSYKWTARNLMYETLKC 268


>08_02_0784 +
           21183223-21183654,21183892-21184065,21184158-21184265,
           21184403-21184457,21184682-21184876,21185291-21185388,
           21186133-21186329,21186408-21186678
          Length = 509

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = +3

Query: 108 AFLVKKANIKKPFSKEPNNVTNLNSYRYNGLI 203
           AF+V+KA+ +  +S   ++V  LNSY Y+GL+
Sbjct: 438 AFIVQKASNQTEYSD--SSVPYLNSYYYSGLV 467


>11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,
            2233053-2233513,2233593-2233717,2233801-2234098,
            2235004-2236234,2236562-2237233,2237329-2238539
          Length = 1884

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = +3

Query: 99   NNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKG 248
            N  A +  K   KKP  ++P         +Y GL+ KK+     N +  G
Sbjct: 1474 NAGAQVQPKTKSKKPKPEKPRKSKKTEEIKYFGLVWKKSTNDKNNNENSG 1523


>02_02_0578 +
           11745811-11746013,11749902-11750241,11750325-11750543,
           11751043-11751102,11751262-11751417,11751518-11751611,
           11751914-11751927
          Length = 361

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -3

Query: 191 VSIRVEVSHIVGFFAERLFDVRLLHEESVIV 99
           V +++++S++ GF  +  F  RL  EESVIV
Sbjct: 325 VMVKLDLSYLDGFHDDMDFCCRLAKEESVIV 355


>01_06_0147 +
           26997641-26997688,26997783-26997857,26997966-26998052,
           26998566-26998622,26998867-26998959,26999528-26999600,
           26999830-26999905,27000217-27000280,27000951-27000980,
           27001251-27001367,27002742-27002782,27002870-27003176,
           27003279-27003368,27003479-27003541,27003678-27003752,
           27003922-27003984,27004714-27004784,27004885-27005068
          Length = 537

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 293 KEHYPSSIQSWSEEVS 340
           K HYPS I SW E++S
Sbjct: 305 KHHYPSPIVSWIEDLS 320


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,117,417
Number of Sequences: 37544
Number of extensions: 201330
Number of successful extensions: 426
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)