Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D05
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75547-8|CAA99898.1|  126|Caenorhabditis elegans Hypothetical pr...    62   3e-10
Z37139-9|CAA85493.1|  396|Caenorhabditis elegans Hypothetical pr...    33   0.15 
U29381-10|AAA68748.1|  136|Caenorhabditis elegans Hypothetical p...    28   4.4  
AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ...    27   5.8  
U41108-2|AAQ23121.2|  639|Caenorhabditis elegans Tropomodulin pr...    27   7.6  
U41108-1|AAQ23120.1|  308|Caenorhabditis elegans Tropomodulin pr...    27   7.6  

>Z75547-8|CAA99898.1|  126|Caenorhabditis elegans Hypothetical
           protein R11D1.8 protein.
          Length = 126

 Score = 61.7 bits (143), Expect = 3e-10
 Identities = 44/123 (35%), Positives = 63/123 (51%)
 Frame = +3

Query: 66  MSSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRK 245
           MS  L W +IRNN+AFL  +  I K FS E  N+  +NS +Y+GL +K A+ V  +   K
Sbjct: 1   MSDALVWQVIRNNSAFLRTQRGIGKRFSTEKFNLKKVNSPKYSGLANKHAIDV--SAAAK 58

Query: 246 GFTIVYKKAKATNKPVKNIIRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRASAIL 425
           G  +  K  K   +P K +        ++  +   +RL K N       K   RRA+AI+
Sbjct: 59  GVVVSTKNEK--GRPAKAVTTSTL---SKTPVASVRRLAK-NAGFNKFNKLAQRRAAAIV 112

Query: 426 RSQ 434
           RSQ
Sbjct: 113 RSQ 115


>Z37139-9|CAA85493.1|  396|Caenorhabditis elegans Hypothetical
           protein C14B1.5 protein.
          Length = 396

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 20/62 (32%), Positives = 32/62 (51%)
 Frame = -3

Query: 305 DNVLYRFIGCLGLLINYREALSVRILNDTDGFLMDQAIVSIRVEVSHIVGFFAERLFDVR 126
           D+   + +GC  LL++Y  +  V I N TDG  M    V+I + +SH++    E     R
Sbjct: 92  DDYTAKSMGC-DLLVHYGHSCLVPIQN-TDGIAMLYVFVNIHINLSHLIDCVKENFQGKR 149

Query: 125 LL 120
           L+
Sbjct: 150 LV 151


>U29381-10|AAA68748.1|  136|Caenorhabditis elegans Hypothetical
           protein F35D11.1 protein.
          Length = 136

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 69  TFCSFNSKNYNNTIHNVFAT 10
           T+C  NS NY NT H+ F T
Sbjct: 105 TYCFCNSSNYCNTGHSTFQT 124


>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
           protein Y47D3B.7 protein.
          Length = 1113

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +3

Query: 243 KGFTIVYKKAKATNKPVKNIIRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRA 413
           +G TI+ ++ K   +   N+I + ++      + + K LL  +  +     ATLRRA
Sbjct: 343 QGTTIIVRRPKTERRTAHNLIEKKYRCSINDRIQQLKVLLCGDEAKLS-KSATLRRA 398


>U41108-2|AAQ23121.2|  639|Caenorhabditis elegans Tropomodulin
           protein 2, isoform b protein.
          Length = 639

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 206 MDQAIVSIRVEVSHIVGFFAERLFDVRLLHE 114
           M+QAI  + +E +++ G F  +LF   L++E
Sbjct: 154 MNQAIKKVNLETNYLSGDFFSKLFKAALVNE 184


>U41108-1|AAQ23120.1|  308|Caenorhabditis elegans Tropomodulin
           protein 2, isoform a protein.
          Length = 308

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 206 MDQAIVSIRVEVSHIVGFFAERLFDVRLLHE 114
           M+QAI  + +E +++ G F  +LF   L++E
Sbjct: 154 MNQAIKKVNLETNYLSGDFFSKLFKAALVNE 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,879,132
Number of Sequences: 27780
Number of extensions: 186439
Number of successful extensions: 494
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)