Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D04
         (573 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.53 
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    24   0.93 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   0.93 
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   3.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.8  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   6.6  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   6.6  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   6.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 143  PDKADEK-PDDTTQETKNKTQNANETTTEKQNATDSETKTKPK 268
            P K D+K  DD T+ET   T  A   T  +    D++ + KP+
Sbjct: 1088 PRKRDQKQSDDKTKETSTVTA-AAAATNIRPGTADNKPQLKPQ 1129


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 195 KPKTRTKQQLRNRTQQ--ILRPKLNRKLLFSKNRSNRMKLSLVYNRYRPNNSKF 350
           K + R+K++ R+RT++     PK+   L      +N    +  YN Y  NN+ +
Sbjct: 58  KYRERSKERSRDRTERERSREPKIISSLSNKTIHNNNNYNNNNYNNYNYNNNNY 111


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 110 ISKLFGSDSETPDKADEKPDDTTQETKNK 196
           I +LFG D +  D   EK  +  ++ KNK
Sbjct: 445 IKRLFGKDRKIMDMVREKIIEEKRKNKNK 473


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 195 KPKTRTKQQLRNRTQQ--ILRPKLNRKLLFSKNRSNRMKLSLVYNRYRPNN 341
           K +  +K++ R+RT++     PK+   L  +   +N  K +   N Y  NN
Sbjct: 57  KYRETSKERSRDRTERERSREPKIISSLSNNTIHNNNYKYNYNNNNYNNNN 107


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 491 LQSRILRIPPCLFSFACPQRTLPSC 417
           ++S +LR PP      CP     SC
Sbjct: 464 VKSPVLRSPPAFSHSRCPPEIHKSC 488


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 491 LQSRILRIPPCLFSFACPQRTLPSC 417
           ++S +LR PP      CP     SC
Sbjct: 464 VKSPVLRSPPAFSHSRCPPEIHKSC 488


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 195 KPKTRTKQQLRNRTQQ--ILRPKLNRKLLFSKNRSNRMKLSLVYNRY 329
           K +  +K++ R+RT++     PK+   L  + N SN    +  YN Y
Sbjct: 58  KYRETSKERSRDRTERERSREPKIISSLSNNYNYSNYNNYNNNYNNY 104


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -2

Query: 524 HCRAFLFLGFLLQSRILRIPPCLFSF 447
           HC    F  FLL   +++I   +++F
Sbjct: 78  HCMTITFASFLLFILLVQIAVAVYAF 103


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 229 FLSCCFVRVLGFIFCFLSRIIRF 161
           F S  F+ +  FIF + + ++RF
Sbjct: 11  FPSTSFILINYFIFLYFNSLVRF 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,384
Number of Sequences: 438
Number of extensions: 2207
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)