Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D03
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    68   9e-13
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    27   1.2  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    27   1.2  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   2.8  
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    25   6.4  

>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 67.7 bits (158), Expect = 9e-13
 Identities = 36/93 (38%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
 Frame = -3

Query: 499 FQRLDKMRKQAFASVCLFGGDNDSTISGVWVWRGHEL--AFPLSPDWQIDYESYEWTKLD 326
           FQRL+  RK  F    + G + D+TI+G +V +GH+   AF ++PDW     SY +TKLD
Sbjct: 322 FQRLEASRKYIFGCCVVIGENGDNTITGAFVIKGHDYVPAFDVAPDW----GSYTFTKLD 377

Query: 325 PHSPDTKALLRDYFSWTGTDKDGRKFNQGKIFK 227
            + P+ KA + D ++W     +GR+   GK+ K
Sbjct: 378 INKPEDKAFIEDAWAW-DKPIEGREVADGKVCK 409


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 415 VWVWRGHELAFPLSPDWQIDYESYEWTKL 329
           ++V  GH    PLS  W  D E+  WT++
Sbjct: 260 IFVHGGHNDTGPLSDLWLFDLETLSWTEV 288


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -3

Query: 463 ASVCLFGGDNDSTISGVWVWRGHELAFPLSPD--WQIDYESYEWTKL 329
           A VC F GD+D  +   W+  G    F  + +  +QI  E Y W+ +
Sbjct: 675 ADVCGFLGDSDEELCSRWMAMGAFSPFYRNHNNIYQISQEPYTWSSV 721


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +1

Query: 1    VRHEGELVSSFFVCFLNKKRFIVIRDDILTETQEILYNGTERSNKCNFI 147
            ++++ EL+   F+  L+     +   D +++ Q +LY G E +N  N I
Sbjct: 1413 MKNKNELIRQEFIGLLSYSIKSLTMVDAISDMQPLLYEGDEEANFFNNI 1461


>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 399 PRQTHTPEMVESLSPPKRQTEAKACLRILSRR 494
           PR  HT  + E++       +A+A LRIL RR
Sbjct: 397 PRPEHTGSVKEAIDLWHSTHDAEASLRILPRR 428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,534,962
Number of Sequences: 5004
Number of extensions: 28639
Number of successful extensions: 86
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)