Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_D03
(501 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 47 7e-06
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 44 7e-05
03_01_0170 + 1389759-1391159 31 0.52
05_05_0038 - 21769936-21770199,21770785-21771198,21771274-217714... 29 1.6
12_01_1022 - 10435409-10435564,10435950-10436219,10436820-104371... 29 2.8
11_06_0057 + 19683226-19684055,19685742-19687824 28 3.7
06_01_0746 + 5580755-5582119 28 4.8
05_01_0029 + 187769-188707,188971-189246,189978-190174,190263-19... 27 8.5
02_01_0193 - 1305109-1305249,1305677-1305835,1305922-1305969,130... 27 8.5
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 47.2 bits (107), Expect = 7e-06
Identities = 22/57 (38%), Positives = 32/57 (56%)
Frame = -3
Query: 496 QRLDKMRKQAFASVCLFGGDNDSTISGVWVWRGHELAFPLSPDWQIDYESYEWTKLD 326
QR+D RK AF + + G + + G+W++RG E+ D D E YEWTK+D
Sbjct: 336 QRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEIP-KFVMDEVYDMELYEWTKVD 391
Score = 47.2 bits (107), Expect = 7e-06
Identities = 22/57 (38%), Positives = 32/57 (56%)
Frame = -3
Query: 496 QRLDKMRKQAFASVCLFGGDNDSTISGVWVWRGHELAFPLSPDWQIDYESYEWTKLD 326
QR+D RK AF + + G + + G+W++RG E+ D D E YEWTK+D
Sbjct: 901 QRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEIP-KFVMDEVYDMELYEWTKVD 956
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 44.0 bits (99), Expect = 7e-05
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = -3
Query: 496 QRLDKMRKQAFASVCLFGGDNDSTISGVWVWRGHELAFPLSPDWQIDYESYEWTKLD 326
+R+D RK AF + + G + G+W++RG ++ D D E YEWTK+D
Sbjct: 347 KRMDLCRKYAFGKMLVIGSTPPFKVKGLWLFRGQDIP-KFVMDEVYDMELYEWTKVD 402
>03_01_0170 + 1389759-1391159
Length = 466
Score = 31.1 bits (67), Expect = 0.52
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +2
Query: 389 ELVAAPDPHAGDGGVVVASEEADGGEGLLAHLVEAL 496
ELV+APD GD G +V S D GL + + E L
Sbjct: 169 ELVSAPDELVGDIGTLVTSSGTDQTNGLSSQVYEML 204
>05_05_0038 -
21769936-21770199,21770785-21771198,21771274-21771434,
21771544-21771607,21771682-21771864,21772355-21772520,
21773397-21773528,21775085-21775599
Length = 632
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Frame = +2
Query: 374 REREGELVAAPDP-----HAGDGGVVVASEEADGGE 466
R R + A P+P A DG V +AS EADGGE
Sbjct: 302 RRRTALVAALPEPLQPLSPAQDGAVALASTEADGGE 337
>12_01_1022 -
10435409-10435564,10435950-10436219,10436820-10437125,
10437932-10438057,10439825-10439893,10440443-10440487,
10440717-10440776,10441527-10441589,10442186-10442266,
10442494-10442916
Length = 532
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 383 EGELVAAPDPHAG-DGGVVVASEEADGGEGLLAHLVEAL 496
+GE + P P DG VVVA +E GGE L + A+
Sbjct: 54 QGEELLLPKPTGWEDGPVVVAGDEVSGGEKLPGEVAAAV 92
>11_06_0057 + 19683226-19684055,19685742-19687824
Length = 970
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1
Query: 10 EGELVSSFFVCFLNKKRFIVIRDDILTET 96
EG+L+ C LNK+ FI+I DD+ +++
Sbjct: 262 EGQLIRKLRECLLNKRYFIII-DDVWSKS 289
>06_01_0746 + 5580755-5582119
Length = 454
Score = 27.9 bits (59), Expect = 4.8
Identities = 16/26 (61%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +2
Query: 398 AAPDPHAGDGGVVVAS-EEADGGEGL 472
AA P AG GGVVVA AD G GL
Sbjct: 18 AASAPGAGAGGVVVARVTHADAGRGL 43
>05_01_0029 +
187769-188707,188971-189246,189978-190174,190263-190404,
190584-190862,190941-191013,191331-191379,192169-192433,
192576-192631,192777-192845,193028-193139,193682-193771,
193955-194125,194449-194506,194970-195128,195379-195401
Length = 985
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 374 REREGELVAAPDPHAGDGGVVVASEEADGGEGLL 475
R+ L A P G GG++VASE+A G ++
Sbjct: 273 RKNGAHLQAIPFARPGTGGLIVASEDAGIGSDVV 306
>02_01_0193 -
1305109-1305249,1305677-1305835,1305922-1305969,
1306621-1306752,1306842-1306896,1307600-1307649,
1307822-1307917,1308001-1308078,1308169-1308243,
1308648-1308764,1308843-1308911,1309035-1309358,
1309534-1309587,1309688-1309747
Length = 485
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 370 DWQIDYESYEWTKLDPHSPDTKALLRD 290
D++ D E PHSPD +AL R+
Sbjct: 312 DYRFDVSKLEPVIAKPHSPDNRALARE 338
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,402,039
Number of Sequences: 37544
Number of extensions: 197197
Number of successful extensions: 803
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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