Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D03
         (501 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72507-15|CAJ55245.1|  365|Caenorhabditis elegans Hypothetical p...   135   1e-32
Z72507-7|CAD56569.1|  373|Caenorhabditis elegans Hypothetical pr...   135   1e-32
Z72507-6|CAA96631.1|  398|Caenorhabditis elegans Hypothetical pr...   135   1e-32
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    33   0.088
AF125460-2|AAD12846.1|  151|Caenorhabditis elegans Hypothetical ...    27   5.8  
Z93389-7|CAJ43450.2|  201|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>Z72507-15|CAJ55245.1|  365|Caenorhabditis elegans Hypothetical
           protein F17C11.9c protein.
          Length = 365

 Score =  135 bits (327), Expect = 1e-32
 Identities = 59/91 (64%), Positives = 72/91 (79%)
 Frame = -3

Query: 499 FQRLDKMRKQAFASVCLFGGDNDSTISGVWVWRGHELAFPLSPDWQIDYESYEWTKLDPH 320
           +QRL+K++K AFAS+ LFG DN+STISG+WVW+G +LAF LSPDWQ+DYESY WTKLD  
Sbjct: 276 YQRLEKLKKNAFASMILFGTDNNSTISGIWVWKGDKLAFELSPDWQVDYESYTWTKLDAK 335

Query: 319 SPDTKALLRDYFSWTGTDKDGRKFNQGKIFK 227
           S  TK  + +Y  W G D  G+KFNQGKIFK
Sbjct: 336 SDATKKEVNEYLMWEG-DFGGKKFNQGKIFK 365


>Z72507-7|CAD56569.1|  373|Caenorhabditis elegans Hypothetical
           protein F17C11.9b protein.
          Length = 373

 Score =  135 bits (327), Expect = 1e-32
 Identities = 59/91 (64%), Positives = 72/91 (79%)
 Frame = -3

Query: 499 FQRLDKMRKQAFASVCLFGGDNDSTISGVWVWRGHELAFPLSPDWQIDYESYEWTKLDPH 320
           +QRL+K++K AFAS+ LFG DN+STISG+WVW+G +LAF LSPDWQ+DYESY WTKLD  
Sbjct: 284 YQRLEKLKKNAFASMILFGTDNNSTISGIWVWKGDKLAFELSPDWQVDYESYTWTKLDAK 343

Query: 319 SPDTKALLRDYFSWTGTDKDGRKFNQGKIFK 227
           S  TK  + +Y  W G D  G+KFNQGKIFK
Sbjct: 344 SDATKKEVNEYLMWEG-DFGGKKFNQGKIFK 373


>Z72507-6|CAA96631.1|  398|Caenorhabditis elegans Hypothetical
           protein F17C11.9a protein.
          Length = 398

 Score =  135 bits (327), Expect = 1e-32
 Identities = 59/91 (64%), Positives = 72/91 (79%)
 Frame = -3

Query: 499 FQRLDKMRKQAFASVCLFGGDNDSTISGVWVWRGHELAFPLSPDWQIDYESYEWTKLDPH 320
           +QRL+K++K AFAS+ LFG DN+STISG+WVW+G +LAF LSPDWQ+DYESY WTKLD  
Sbjct: 309 YQRLEKLKKNAFASMILFGTDNNSTISGIWVWKGDKLAFELSPDWQVDYESYTWTKLDAK 368

Query: 319 SPDTKALLRDYFSWTGTDKDGRKFNQGKIFK 227
           S  TK  + +Y  W G D  G+KFNQGKIFK
Sbjct: 369 SDATKKEVNEYLMWEG-DFGGKKFNQGKIFK 398


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 33.5 bits (73), Expect = 0.088
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -3

Query: 382  PLSPDWQIDYESYEWTKL 329
            PL PD Q+D+++YEW KL
Sbjct: 2672 PLGPDGQVDFQNYEWQKL 2689


>AF125460-2|AAD12846.1|  151|Caenorhabditis elegans Hypothetical
           protein Y9D1A.2 protein.
          Length = 151

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 361 IDYESYEWTKLDPHSPDTKALLRDYFSWTGTDKDG 257
           +D++   W  +D        + RD   W GTD+DG
Sbjct: 1   MDWDGSGWIGMDRDGSGWIGMDRDGSGWIGTDRDG 35


>Z93389-7|CAJ43450.2|  201|Caenorhabditis elegans Hypothetical
           protein T13F3.9 protein.
          Length = 201

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -3

Query: 199 SHLTHLTYKSKPCLIYI 149
           SHL  LT K +PCL YI
Sbjct: 65  SHLKSLTTKIRPCLFYI 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,653,821
Number of Sequences: 27780
Number of extensions: 162841
Number of successful extensions: 551
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)