Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D03
         (501 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   9.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   9.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 110 TTEQSVVINAILLNINKTRFALIS 181
           TTEQSVV+  +   IN    ++IS
Sbjct: 825 TTEQSVVVTNVTTTINTPTTSVIS 848


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +3

Query: 360 ICQSGESGKASSWPRQTHTPEMVESLSP 443
           IC S  S  A  W R   T E+ E   P
Sbjct: 172 ICSSAISFPAIVWWRAVRTEEVPEDKCP 199


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 79  DILTETQEILYNGT 120
           D+L ET+ I YN T
Sbjct: 203 DVLVETEPIYYNLT 216


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 7   HEGELVSSFFVCFLNKKRFIVIRDDI 84
           H   L  S F+C  ++KR+   RD +
Sbjct: 286 HHAILGHSGFLCERHQKRYFFGRDSV 311


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,384
Number of Sequences: 438
Number of extensions: 1957
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)