Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D02
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|...    36   0.005
SPBC28E12.01c |apc13|SPBC9B6.12c|anaphase-promoting complex subu...    32   0.066
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    29   0.47 
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    25   5.8  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   7.6  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    25   7.6  

>SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 35.5 bits (78), Expect = 0.005
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +2

Query: 119 MRITRYKKVQKYLKFYYNNFGFHQPYQVLIDGTF 220
           MR  R K  +K +  Y   FGF +PYQVL+D  F
Sbjct: 1   MRQKRAKNYRKLMHTYQLLFGFREPYQVLVDADF 34


>SPBC28E12.01c |apc13|SPBC9B6.12c|anaphase-promoting complex subunit
           Apc13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 135

 Score = 31.9 bits (69), Expect = 0.066
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
 Frame = +3

Query: 240 MDSKYR---RNGRLIDIVTEEWRADRLPHEDIQVPLEELPDPEAD------SADSHLTLK 392
           MDS Y     N   + +   +W  DRLP +D++V +E LP    D      S+ + + +K
Sbjct: 1   MDSNYNYVHMNKPGVVLFASDWLKDRLPVDDVEVRVEHLPPVTEDEMTIQHSSANLILMK 60

Query: 393 EQSMRWQENFPELPREN 443
            + +R +  + +L  E+
Sbjct: 61  NKQLRHEPAWKDLELED 77


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 225 LLLRKMDSKYRRNGRLIDIVTEEW 296
           L ++KMD++YR    L+  VT EW
Sbjct: 191 LAVKKMDAEYRETNELLLTVTREW 214


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 283 LRKSGARIDYRMKTSKYPSKNY 348
           L+ +GA I YRM T   P  NY
Sbjct: 431 LQSAGAAITYRMDTLNIPYMNY 452


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 256  RYLLSIFRSSKTKCSVYQYLVRLVETKIVIIKF-EVLLDFFV 134
            RYLLS+F  +  K +  Q+L R   +   I +  ++ LD  +
Sbjct: 1410 RYLLSLFYKTNDKVNFLQFLKRFRRSSSTIYEHRQIWLDIMI 1451


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -2

Query: 277 SIKRPLRRYLLSIFRSSKTKCSVYQYLVRLVETKIVIIKFEVLLDFFVS 131
           SI   L +   S F+ S    + Y Y     E K V I+F++ L  F+S
Sbjct: 144 SIPETLSQVNRSSFQKSSCAYTDYLYTSNSKEAKTVRIRFQLFLVEFIS 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,311,118
Number of Sequences: 5004
Number of extensions: 48888
Number of successful extensions: 123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)