Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D02
         (560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0164 - 15862166-15862366,15862443-15862508,15862754-158630...    45   4e-05
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298...    30   1.1  
03_02_0156 - 5981080-5982189,5982227-5982247,5983308-5983337           28   4.4  
02_01_0410 + 2996779-2997888                                           28   4.4  

>02_03_0164 -
           15862166-15862366,15862443-15862508,15862754-15863029,
           15864869-15864989,15865091-15865368
          Length = 313

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 18/34 (52%), Positives = 25/34 (73%)
 Frame = +2

Query: 119 MRITRYKKVQKYLKFYYNNFGFHQPYQVLIDGTF 220
           MR+ R  K +K ++FY   FGF +PY+VL+DGTF
Sbjct: 1   MRVKRRSKNRKVVRFYATCFGFREPYRVLVDGTF 34


>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
            31029955-31030017,31031597-31031704,31031772-31031836,
            31031928-31032015,31032104-31032157,31032234-31032380,
            31033358-31033429,31034077-31034226,31034317-31034430,
            31034762-31034875,31035925-31036077,31037437-31037529,
            31038202-31038318,31038984-31039086,31039192-31039376,
            31039448-31039522,31040451-31040534,31041547-31041588,
            31041668-31041847,31042109-31042162,31042239-31042280,
            31042869-31042967,31043040-31043174,31043325-31043427,
            31045061-31045134,31045227-31045270,31045393-31045471,
            31045592-31045705,31045842-31045946,31046027-31046161,
            31046447-31046546,31046870-31046883,31046936-31047004,
            31047079-31047182,31047299-31047347,31047931-31048023,
            31048102-31048210,31048619-31048755,31048851-31048928,
            31049015-31049104,31049402-31049467,31049546-31049638,
            31049711-31049839,31050024-31050122,31051366-31051512,
            31051605-31051910
          Length = 2050

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 285  TEEWRADRLPHEDIQVPLEELPDPEAD 365
            T E + ++ PHED+  P+  LP  E D
Sbjct: 1740 TSELKTEQSPHEDVMAPVPVLPSTELD 1766


>03_02_0156 - 5981080-5982189,5982227-5982247,5983308-5983337
          Length = 386

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -3

Query: 162 NLRYFWTFLYRVILIFYK*ITNLELLLFFDSGILLYVRQTTTI 34
           NLR  W FL   ++ +    TN ELLL  +    +  R    I
Sbjct: 114 NLRTMWKFLPAAVMFYISIFTNSELLLHANVDTFIVFRSAVPI 156


>02_01_0410 + 2996779-2997888
          Length = 369

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -3

Query: 162 NLRYFWTFLYRVILIFYK*ITNLELLLFFDSGILLYVRQTTTI 34
           NLR  W FL   ++ +    TN ELLL  +    +  R    I
Sbjct: 97  NLRTMWKFLPAAVMFYISIFTNSELLLHANVDTFIVFRSAVPI 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,509,034
Number of Sequences: 37544
Number of extensions: 262925
Number of successful extensions: 518
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)