Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D02
         (560 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14271| Best HMM Match : Pkinase (HMM E-Value=2.1e-27)               33   0.12 
SB_4878| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.37 
SB_22071| Best HMM Match : Keratin_B2 (HMM E-Value=3.3)                31   0.85 
SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_16794| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_47876| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_6818| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.0  
SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             27   7.9  

>SB_14271| Best HMM Match : Pkinase (HMM E-Value=2.1e-27)
          Length = 2056

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 306 RLPHEDIQVPLEELPDPEADSADSHLTLKEQSMRWQENFPELPRENQ 446
           R PH++    + ++P  E D  DS +T  EQS++  E  P++  E Q
Sbjct: 741 RKPHDEAAFQIVDIPSDEEDMLDSMMTAFEQSIKADEK-PQIEEEAQ 786


>SB_4878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 598

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 306 RLPHEDIQVPLEELPDPEADSADSHLTLKEQSMRWQENFPELPRENQ 446
           R PH++    +  +P  E D  DS +T  EQS++  E  P++  E Q
Sbjct: 165 RKPHDEAAFQIVGIPSDEEDMLDSMMTAFEQSIKADEK-PQIEEEAQ 210


>SB_22071| Best HMM Match : Keratin_B2 (HMM E-Value=3.3)
          Length = 260

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 26/68 (38%), Positives = 34/68 (50%)
 Frame = -1

Query: 230 QQNKMFRLSVLGKVGGNQNCYNKI*GTSGLFCIELFSFSINKLQTLNYYCFLIQEYYCTF 51
           Q  K+ R S+L     N NCYN    T+   C +   F + KL  LN  C +    YCT 
Sbjct: 64  QIRKVLRNSILA----NYNCYNWPGKTNATHCND---FIVYKLWPLN--CNI---RYCTE 111

Query: 50  DRQQQLEN 27
           D Q+QL+N
Sbjct: 112 DIQEQLQN 119


>SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1892

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/56 (28%), Positives = 31/56 (55%)
 Frame = +1

Query: 301 RIDYRMKTSKYPSKNYLIPKQIVLTHILH*KNKACVGRKTFRNYLEKINIREQIPK 468
           ++D R    K   ++YL  K  +  H++    K  + +  FR+YL+K++IR+ + K
Sbjct: 448 KVDIRDYLEKVDIRDYL-EKVDIRDHLVKVDIKDYLEKVDFRDYLDKVDIRDHLEK 502


>SB_16794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1407

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +3

Query: 231  LRKMDSKYRRNGRLIDIVTEEWRADRLPHEDIQVPLEELPDPEADSADSHLTLKEQSMRW 410
            ++K+ ++ + + ++ID  T E    RL     +  LEE     + S    L L+    RW
Sbjct: 1026 IKKLKAEEKEHLKVIDTETSELEKLRLERSAKKSELEEKEVSNSCSPGDPLVLERPPPRW 1085

Query: 411  QENFP 425
              N P
Sbjct: 1086 SSNSP 1090


>SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 334 PSKNYLIPKQIVLTHILH*KNKACVGRKTFRNY 432
           P    LIPKQ + TH  H  N A   +  FRN+
Sbjct: 152 PGAGILIPKQPIATHDQHLPNDATNLQTDFRNF 184


>SB_47876| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 211 VYQYLVRLVETKIVIIKFEVL 149
           VYQ L R+VE KI+++ +E L
Sbjct: 7   VYQVLTRVVEPKIIVVAYESL 27


>SB_6818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1784

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -1

Query: 341  FEGYLDVFMR*SIRAPLFRNYVYQTTVAPVLA 246
            F+ Y+DVF+R +IR P    YV +TT+  + A
Sbjct: 990  FDKYVDVFVRPAIR-PTSDKYVLKTTIPDMAA 1020


>SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1752

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 197  QVLIDGTFCFAASKNG*QVPAQR 265
            QV   GT C+  +KNG ++P  R
Sbjct: 977  QVQCQGTVCYCVNKNGEEIPGTR 999


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,323,605
Number of Sequences: 59808
Number of extensions: 318519
Number of successful extensions: 777
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)