Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_D02
(560 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC005398-1|AAH05398.1| 74|Homo sapiens anaphase promoting comp... 76 7e-14
BC022441-1|AAH22441.1| 249|Homo sapiens chromosome 8 open readi... 58 3e-08
BC005955-1|AAH05955.1| 249|Homo sapiens chromosome 8 open readi... 58 3e-08
AK055279-1|BAB70896.1| 145|Homo sapiens protein ( Homo sapiens ... 58 3e-08
U75370-1|AAB58255.1| 1230|Homo sapiens mitochondrial RNA polymer... 30 6.4
BC098387-1|AAH98387.1| 1230|Homo sapiens polymerase (RNA) mitoch... 30 6.4
AC004449-1|AAC06147.1| 1230|Homo sapiens RPOM_HUMAN protein. 30 6.4
AB209920-1|BAD93157.1| 1072|Homo sapiens DNA-directed RNA polyme... 30 6.4
BC001473-1|AAH01473.1| 563|Homo sapiens glucocorticoid modulato... 29 8.5
AL645729-3|CAH72427.1| 573|Homo sapiens glucocorticoid modulato... 29 8.5
AL645729-2|CAH72428.1| 563|Homo sapiens glucocorticoid modulato... 29 8.5
AF203694-1|AAG01189.1| 563|Homo sapiens glucocorticoid modulato... 29 8.5
AF173868-1|AAD51352.1| 563|Homo sapiens DNA binding protein p96... 29 8.5
AF099013-1|AAD39355.1| 573|Homo sapiens glucocorticoid modulato... 29 8.5
>BC005398-1|AAH05398.1| 74|Homo sapiens anaphase promoting complex
subunit 13 protein.
Length = 74
Score = 76.2 bits (179), Expect = 7e-14
Identities = 29/68 (42%), Positives = 49/68 (72%)
Frame = +3
Query: 240 MDSKYRRNGRLIDIVTEEWRADRLPHEDIQVPLEELPDPEADSADSHLTLKEQSMRWQEN 419
MDS+ +R+GR++D++ + WR D+LP+ED+ +PL ELP+PE D+ + ++KEQ M+W +
Sbjct: 1 MDSEVQRDGRILDLIDDAWREDKLPYEDVAIPLNELPEPEQDNGGTTESVKEQEMKWTDL 60
Query: 420 FPELPREN 443
+ EN
Sbjct: 61 ALQYLHEN 68
>BC022441-1|AAH22441.1| 249|Homo sapiens chromosome 8 open reading
frame 53 protein.
Length = 249
Score = 57.6 bits (133), Expect = 3e-08
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = +2
Query: 119 MRITRYKKVQKYLKFYYNNFGFHQPYQVLIDGTFCFAASKNG*QVPAQ 262
M+ITR K +K+L F+ NNFG +PYQ+L+DGTFC AA + Q+ Q
Sbjct: 1 MKITRQKHAKKHLGFFRNNFGVREPYQILLDGTFCQAALRGRIQLREQ 48
Score = 33.9 bits (74), Expect = 0.39
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 439 KINIREQIPKYLNAQAKLLTTRCXXXXXXXXXXXXHGA 552
+I +REQ+P+YL + +L TTRC +GA
Sbjct: 42 RIQLREQLPRYLMGETQLCTTRCVLKELETLGKDLYGA 79
>BC005955-1|AAH05955.1| 249|Homo sapiens chromosome 8 open reading
frame 53 protein.
Length = 249
Score = 57.6 bits (133), Expect = 3e-08
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = +2
Query: 119 MRITRYKKVQKYLKFYYNNFGFHQPYQVLIDGTFCFAASKNG*QVPAQ 262
M+ITR K +K+L F+ NNFG +PYQ+L+DGTFC AA + Q+ Q
Sbjct: 1 MKITRQKHAKKHLGFFRNNFGVREPYQILLDGTFCQAALRGRIQLREQ 48
Score = 33.9 bits (74), Expect = 0.39
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 439 KINIREQIPKYLNAQAKLLTTRCXXXXXXXXXXXXHGA 552
+I +REQ+P+YL + +L TTRC +GA
Sbjct: 42 RIQLREQLPRYLMGETQLCTTRCVLKELETLGKDLYGA 79
>AK055279-1|BAB70896.1| 145|Homo sapiens protein ( Homo sapiens
cDNA FLJ30717 fis, clone FCBBF2001672. ).
Length = 145
Score = 57.6 bits (133), Expect = 3e-08
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = +2
Query: 119 MRITRYKKVQKYLKFYYNNFGFHQPYQVLIDGTFCFAASKNG*QVPAQ 262
M+ITR K +K+L F+ NNFG +PYQ+L+DGTFC AA + Q+ Q
Sbjct: 1 MKITRQKHAKKHLGFFRNNFGVREPYQILLDGTFCQAALRGRIQLREQ 48
Score = 33.9 bits (74), Expect = 0.39
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 439 KINIREQIPKYLNAQAKLLTTRCXXXXXXXXXXXXHGA 552
+I +REQ+P+YL + +L TTRC +GA
Sbjct: 42 RIQLREQLPRYLMGETQLCTTRCVLKELETLGKDLYGA 79
>U75370-1|AAB58255.1| 1230|Homo sapiens mitochondrial RNA polymerase
protein.
Length = 1230
Score = 29.9 bits (64), Expect = 6.4
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 252 YRRNGRLIDIVTEEWRADRLPHEDIQVPLEELPD-PEADSADSHLTLKEQSMR 407
+R NGR++D+V + ++A P + P E P PEA S ++ +R
Sbjct: 707 WRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHSAAPARKAELR 759
>BC098387-1|AAH98387.1| 1230|Homo sapiens polymerase (RNA)
mitochondrial (DNA directed) protein.
Length = 1230
Score = 29.9 bits (64), Expect = 6.4
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 252 YRRNGRLIDIVTEEWRADRLPHEDIQVPLEELPD-PEADSADSHLTLKEQSMR 407
+R NGR++D+V + ++A P + P E P PEA S ++ +R
Sbjct: 707 WRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHSAAPARKAELR 759
>AC004449-1|AAC06147.1| 1230|Homo sapiens RPOM_HUMAN protein.
Length = 1230
Score = 29.9 bits (64), Expect = 6.4
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 252 YRRNGRLIDIVTEEWRADRLPHEDIQVPLEELPD-PEADSADSHLTLKEQSMR 407
+R NGR++D+V + ++A P + P E P PEA S ++ +R
Sbjct: 707 WRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHSAAPARKAELR 759
>AB209920-1|BAD93157.1| 1072|Homo sapiens DNA-directed RNA
polymerase variant protein.
Length = 1072
Score = 29.9 bits (64), Expect = 6.4
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 252 YRRNGRLIDIVTEEWRADRLPHEDIQVPLEELPD-PEADSADSHLTLKEQSMR 407
+R NGR++D+V + ++A P + P E P PEA S ++ +R
Sbjct: 549 WRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHSAAPARKAELR 601
>BC001473-1|AAH01473.1| 563|Homo sapiens glucocorticoid modulatory
element binding protein 1 protein.
Length = 563
Score = 29.5 bits (63), Expect = 8.5
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +3
Query: 330 VPLEELPDPEADSADSHLTLKEQSMRWQENFPELPRENQH*RANTKI 470
+ ++ PDPEA+ + + E +R +E E+QH N +I
Sbjct: 512 IEIDPAPDPEAEDTEGKAVILETELRTEEKVVAEMEEHQHQVHNVEI 558
>AL645729-3|CAH72427.1| 573|Homo sapiens glucocorticoid modulatory
element binding proteinS. cerevisiae) protein.
Length = 573
Score = 29.5 bits (63), Expect = 8.5
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +3
Query: 330 VPLEELPDPEADSADSHLTLKEQSMRWQENFPELPRENQH*RANTKI 470
+ ++ PDPEA+ + + E +R +E E+QH N +I
Sbjct: 522 IEIDPAPDPEAEDTEGKAVILETELRTEEKVVAEMEEHQHQVHNVEI 568
>AL645729-2|CAH72428.1| 563|Homo sapiens glucocorticoid modulatory
element binding proteinS. cerevisiae) protein.
Length = 563
Score = 29.5 bits (63), Expect = 8.5
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +3
Query: 330 VPLEELPDPEADSADSHLTLKEQSMRWQENFPELPRENQH*RANTKI 470
+ ++ PDPEA+ + + E +R +E E+QH N +I
Sbjct: 512 IEIDPAPDPEAEDTEGKAVILETELRTEEKVVAEMEEHQHQVHNVEI 558
>AF203694-1|AAG01189.1| 563|Homo sapiens glucocorticoid modulatory
element binding protein 1 protein.
Length = 563
Score = 29.5 bits (63), Expect = 8.5
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +3
Query: 330 VPLEELPDPEADSADSHLTLKEQSMRWQENFPELPRENQH*RANTKI 470
+ ++ PDPEA+ + + E +R +E E+QH N +I
Sbjct: 512 IEIDPAPDPEAEDTEGKAVILETELRTEEKVVAEMEEHQHQVHNVEI 558
>AF173868-1|AAD51352.1| 563|Homo sapiens DNA binding protein p96PIF
protein.
Length = 563
Score = 29.5 bits (63), Expect = 8.5
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +3
Query: 330 VPLEELPDPEADSADSHLTLKEQSMRWQENFPELPRENQH*RANTKI 470
+ ++ PDPEA+ + + E +R +E E+QH N +I
Sbjct: 512 IEIDPAPDPEAEDTEGKAVILETELRTEEKVVAEMEEHQHQVHNVEI 558
>AF099013-1|AAD39355.1| 573|Homo sapiens glucocorticoid modulatory
element binding protein-1 protein.
Length = 573
Score = 29.5 bits (63), Expect = 8.5
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +3
Query: 330 VPLEELPDPEADSADSHLTLKEQSMRWQENFPELPRENQH*RANTKI 470
+ ++ PDPEA+ + + E +R +E E+QH N +I
Sbjct: 522 IEIDPAPDPEAEDTEGKAVILETELRTEEKVVAEMEEHQHQVHNVEI 568
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,520,802
Number of Sequences: 237096
Number of extensions: 1462540
Number of successful extensions: 7125
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7125
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5646880600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -