Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D02
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-1|AAK67218.1|  232|Caenorhabditis elegans Hypothetical pr...    46   1e-05
AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protei...    31   0.75 
Z81545-8|CAB04444.1|  327|Caenorhabditis elegans Hypothetical pr...    28   4.0  
Z93382-7|CAB07618.1|  214|Caenorhabditis elegans Hypothetical pr...    27   7.0  

>U10402-1|AAK67218.1|  232|Caenorhabditis elegans Hypothetical
           protein C34E10.10 protein.
          Length = 232

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 19/38 (50%), Positives = 26/38 (68%)
 Frame = +2

Query: 119 MRITRYKKVQKYLKFYYNNFGFHQPYQVLIDGTFCFAA 232
           M++ R K+  + L FY  N+ F  PY+VL+DGTFC AA
Sbjct: 1   MKVKRLKRANRLLTFYKYNYKFVAPYRVLVDGTFCNAA 38



 Score = 36.7 bits (81), Expect = 0.011
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = +1

Query: 436 EKINIREQIPKYLNAQAKLLTTRC 507
           EK+N+ EQIPKYL  +  L+TT C
Sbjct: 41  EKLNLAEQIPKYLTEETHLMTTNC 64


>AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protein 4
           protein.
          Length = 741

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +3

Query: 237 KMDSKYRRNGRLIDIVTEEWRADRLPHEDIQVPLEELPD 353
           K+ S   RNG+L+D V  EWR D+ P E +    EE  D
Sbjct: 550 KITSNGVRNGKLVDPVMREWRLDK-PVEQVNT-WEEFSD 586


>Z81545-8|CAB04444.1|  327|Caenorhabditis elegans Hypothetical
           protein F49H6.11 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/39 (28%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -3

Query: 147 WTFLYRVILIFYK*IT-NLELLLFFDSGILLYVRQTTTI 34
           + F+  ++++F+K IT  + + +FFD G +L+V   + +
Sbjct: 232 YMFIQSIMVLFFKIITVTISIPIFFDEGSVLFVSSMSIV 270


>Z93382-7|CAB07618.1|  214|Caenorhabditis elegans Hypothetical
           protein F45G2.9 protein.
          Length = 214

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 303 DRLPHEDIQVPLEEL-PDPEADSADSHLTLKE 395
           ++L H  + V L ++ P+P  D+A  HL L E
Sbjct: 112 EKLAHRQVDVVLSDMAPNPTGDNATDHLRLIE 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,587,986
Number of Sequences: 27780
Number of extensions: 270182
Number of successful extensions: 717
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)