Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D01
         (261 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P38873 Cluster: Target of rapamycin complex 1 subunit K...    36   0.24 
UniRef50_Q4G2T4 Cluster: Delta-8 fatty acid desaturase; n=1; Tha...    33   1.3  
UniRef50_Q9U2L6 Cluster: Putative uncharacterized protein sre-16...    33   1.7  
UniRef50_Q9ZDG1 Cluster: Uncharacterized protein RP368; n=10; Ri...    32   2.2  
UniRef50_A5J120 Cluster: O-antigen polymerase; n=7; Leptospira|R...    31   3.8  
UniRef50_A5E5T6 Cluster: Predicted protein; n=1; Lodderomyces el...    31   3.8  
UniRef50_Q7RDS5 Cluster: Putative uncharacterized protein PY0534...    31   5.1  
UniRef50_UPI0000499719 Cluster: hypothetical protein 43.t00024; ...    31   6.7  
UniRef50_Q3C0K6 Cluster: Putative uncharacterized protein; n=2; ...    31   6.7  
UniRef50_A4BR76 Cluster: ABC transporter, permease protein; n=1;...    31   6.7  
UniRef50_A0LGZ7 Cluster: Putative uncharacterized protein precur...    31   6.7  
UniRef50_Q0E546 Cluster: 35.1 kDa; n=2; Ascovirus|Rep: 35.1 kDa ...    30   8.9  
UniRef50_Q12KT3 Cluster: Putative uncharacterized protein precur...    30   8.9  

>UniRef50_P38873 Cluster: Target of rapamycin complex 1 subunit
           KOG1; n=2; Saccharomyces cerevisiae|Rep: Target of
           rapamycin complex 1 subunit KOG1 - Saccharomyces
           cerevisiae (Baker's yeast)
          Length = 1557

 Score = 35.5 bits (78), Expect = 0.24
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
 Frame = +1

Query: 61  IFLLFSTMRSFALHRKNMGSF--LNQICFSSCNWPTRVLRIFCIILLTFL 204
           +F+L S +R+F L +KN  S   +N++CF   N    +LR +C+ILL  L
Sbjct: 717 VFVLASFVRNFPLGQKNCFSLELVNKLCFYIDNSEIPLLRQWCVILLGLL 766


>UniRef50_Q4G2T4 Cluster: Delta-8 fatty acid desaturase; n=1;
           Thalassiosira pseudonana|Rep: Delta-8 fatty acid
           desaturase - Thalassiosira pseudonana (Marine diatom)
          Length = 476

 Score = 33.1 bits (72), Expect = 1.3
 Identities = 16/68 (23%), Positives = 40/68 (58%)
 Frame = +3

Query: 57  RYISVVLHYEILCFTQKKYGFISQSNMF*FMQLAYPSSKNILYYFINFSVLLILGIFDDI 236
           +Y+ + +  + +   ++KY  ++   M+ ++ +  P   N L +   F +++++GI + +
Sbjct: 295 QYVGIQMENDFIV-KRRKYA-VALRMMYIYLNIVSPFMNNGLSWS-TFGIIMLMGISESL 351

Query: 237 TLSVIFSI 260
           TLSV+FS+
Sbjct: 352 TLSVLFSL 359


>UniRef50_Q9U2L6 Cluster: Putative uncharacterized protein sre-16;
           n=1; Caenorhabditis elegans|Rep: Putative
           uncharacterized protein sre-16 - Caenorhabditis elegans
          Length = 337

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = +3

Query: 21  IYNNVRVPYYFCRYISVVLHYEILCFTQKKYGFISQSNMF*FMQLAYPSSKNILYYFINF 200
           I  N+RV  Y+ RY+S++  + I+C     + F +  N+   ++  +  S  +L  F  F
Sbjct: 201 ISENIRVFKYYTRYVSILTFFIIVCILSVIFSFSATPNVQRLLKFIFNLSYTLLTIFGPF 260

Query: 201 SVL 209
             L
Sbjct: 261 FFL 263


>UniRef50_Q9ZDG1 Cluster: Uncharacterized protein RP368; n=10;
           Rickettsia|Rep: Uncharacterized protein RP368 -
           Rickettsia prowazekii
          Length = 280

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = +3

Query: 117 FISQSNMF*FMQLAYPSSKNILYYFINFSVLLILGIFDDITLSVIFSI 260
           F++  N F  ++  +     IL+YFI+ S+LL +GI D I L +I  I
Sbjct: 220 FLNNINNFNALKEIFACFIGILFYFISLSILLHIGI-DPINLKLILGI 266


>UniRef50_A5J120 Cluster: O-antigen polymerase; n=7; Leptospira|Rep:
           O-antigen polymerase - Leptospira weilii serovar Sarmin
          Length = 431

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 13  YQLFIIMYEFLTIFAGIFLLFSTMRSFALHRKNMGSF 123
           Y L+I++  F+T+ AGIF L S  R   L  K+   F
Sbjct: 56  YFLYIMLLSFVTVGAGIFKLLSYKRKITLFSKSYSVF 92


>UniRef50_A5E5T6 Cluster: Predicted protein; n=1; Lodderomyces
           elongisporus NRRL YB-4239|Rep: Predicted protein -
           Lodderomyces elongisporus (Yeast) (Saccharomyces
           elongisporus)
          Length = 154

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 21/71 (29%), Positives = 35/71 (49%)
 Frame = +3

Query: 3   TRQVSVIYNNVRVPYYFCRYISVVLHYEILCFTQKKYGFISQSNMF*FMQLAYPSSKNIL 182
           T Q +  YNN    YY+C + +++LH+  L        F S ++ F +  LAY S    L
Sbjct: 31  TDQHAAGYNNYNYYYYYCYFTTLLLHFASLL-------FYSTNSTFYYCTLAYCSLLLSL 83

Query: 183 YYFINFSVLLI 215
           +  +  S +L+
Sbjct: 84  FTSLLLSSILL 94


>UniRef50_Q7RDS5 Cluster: Putative uncharacterized protein PY05346;
           n=6; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY05346 - Plasmodium yoelii yoelii
          Length = 956

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +3

Query: 96  FTQKKYGFISQSNMF*FMQLAYPSSKNILYYFINFSVLLILGIFDDIT 239
           F  + Y ++    +  F Q+ Y  SKNI   F+NFS  L++  +DD T
Sbjct: 82  FYLRLYIYLLYKVLLFFNQIYYERSKNICEIFVNFSFKLLI-FYDDQT 128


>UniRef50_UPI0000499719 Cluster: hypothetical protein 43.t00024;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 43.t00024 - Entamoeba histolytica HM-1:IMSS
          Length = 199

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +1

Query: 25  IIMYEFLTIFAGIFLLFSTMRSFALHRKNMGSFLNQICFSSCNWPTRVLRIFCIILLTFL 204
           IIMY  L+IF      +S   +  + ++ +    N++CF+ C W  +  R +C   +   
Sbjct: 87  IIMYCILSIFTNSITTYSI--NSIIKKEQLIGVENEVCFNCCGW--KEPRNYCSSKILPT 142

Query: 205 CY 210
           CY
Sbjct: 143 CY 144


>UniRef50_Q3C0K6 Cluster: Putative uncharacterized protein; n=2;
           Sodalis glossinidius|Rep: Putative uncharacterized
           protein - Sodalis glossinidius
          Length = 220

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 13/30 (43%), Positives = 22/30 (73%)
 Frame = +1

Query: 25  IIMYEFLTIFAGIFLLFSTMRSFALHRKNM 114
           II+  F++ F G+F LFS +++ +L +KNM
Sbjct: 142 IIILIFVSTFFGMFSLFSYLKNISLQQKNM 171


>UniRef50_A4BR76 Cluster: ABC transporter, permease protein; n=1;
           Nitrococcus mobilis Nb-231|Rep: ABC transporter,
           permease protein - Nitrococcus mobilis Nb-231
          Length = 837

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +1

Query: 4   RGKYQLFIIMYEFLTIFAGIFLLFSTMRSFALHRKNMGSFLNQI 135
           R  +Q+ +  +  L +  G+FL+F+TM    + R+ M   L  +
Sbjct: 248 RAAFQINLTAFSLLALVIGLFLVFNTMSFMVVQRRRMIGILRAV 291


>UniRef50_A0LGZ7 Cluster: Putative uncharacterized protein
           precursor; n=1; Syntrophobacter fumaroxidans MPOB|Rep:
           Putative uncharacterized protein precursor -
           Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB)
          Length = 858

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +1

Query: 13  YQLFIIMYEFLTIFAGIFLLFSTMRSFALHRKNMGSFLNQICFSS 147
           YQL + +  F+++F G+FL++S +   A  R++  + L  I  SS
Sbjct: 254 YQLNLSVLSFVSLFVGMFLVYSLISLHATARRHEVAILRSIGSSS 298


>UniRef50_Q0E546 Cluster: 35.1 kDa; n=2; Ascovirus|Rep: 35.1 kDa -
           Spodoptera frugiperda ascovirus 1a
          Length = 312

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 82  MRSFALH-RKNMGSFLNQICFSSCNW 156
           +R +AL  RKN+G F+ + C SSC W
Sbjct: 19  VREYALGVRKNVGLFVPKKCISSCKW 44


>UniRef50_Q12KT3 Cluster: Putative uncharacterized protein
           precursor; n=1; Shewanella denitrificans OS217|Rep:
           Putative uncharacterized protein precursor - Shewanella
           denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
          Length = 485

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +3

Query: 45  YYFCRYISVVLHYEILCFTQKKYGFISQSNMF*-FMQLAYPSSKNILYYFINFSVLLILG 221
           Y F  +IS+++   +       Y  I+ S  F  F  L Y   KN  Y F+ FS+L + G
Sbjct: 101 YIFADFISILIFDNVTWAQGVFYALITASFGFINFAFLTYFRLKNEPYLFLFFSILSVFG 160

Query: 222 IFDDITLSVIF 254
               I   VIF
Sbjct: 161 NIVGIYYFVIF 171


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,052,088
Number of Sequences: 1657284
Number of extensions: 3808421
Number of successful extensions: 10502
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 10253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10500
length of database: 575,637,011
effective HSP length: 64
effective length of database: 469,570,835
effective search space used: 10330558370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)