Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_D01
(261 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 0.72
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po... 26 0.72
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 25 1.7
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 1.7
SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit L37|... 25 1.7
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo... 25 1.7
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha... 24 2.9
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 24 2.9
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 24 3.8
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch... 23 6.7
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 23 6.7
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 23 6.7
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 23 6.7
SPAC25B8.02 |||histone deacetylase complex subunit Sds3 |Schizos... 23 8.8
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 23 8.8
>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 26.2 bits (55), Expect = 0.72
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +1
Query: 10 KYQLFIIMYEFLTIFAGIFLLFSTMRSFALHRKNMGSFLNQICFSS 147
KY+LFII Y + + F R H + SF+ +I SS
Sbjct: 61 KYELFIIYYYYYLLICLSPHFFPIKRIRPFHENPLHSFVYRIMISS 106
>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 586
Score = 26.2 bits (55), Expect = 0.72
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 73 FSTMRSFALHRKNMGSFLNQICFSSCNWPTRVLRIF 180
F R HR+++ LN++ S +W R LRI+
Sbjct: 539 FEFQRYQDTHRQDLNRILNRLTDSHIDWANRNLRIW 574
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.0 bits (52), Expect = 1.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 124 LNQICFSSCNWPTRVLRIFCIILLTFLCY 210
LNQ ++ N+ RV I CI L+ F+C+
Sbjct: 80 LNQTRETNSNFDNRVGVIECIHLVNFMCH 108
>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 106
Score = 25.0 bits (52), Expect = 1.7
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Frame = +1
Query: 136 CFSSCNWPTRVLRIFCIILLTFL--CY 210
C SSCN+ +L C+ +L CY
Sbjct: 52 CLSSCNYALSILHNICLASFLYLSKCY 78
>SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit
L37|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 25.0 bits (52), Expect = 1.7
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = -2
Query: 107 FLCKAKDLIVENNRNIPAKIVRNSYI 30
F C + L++ ++RN + +V+ SY+
Sbjct: 21 FSCYSNTLVLRSSRNSSSSLVKRSYV 46
>SPCC553.12c ||SPCC794.13|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 521
Score = 25.0 bits (52), Expect = 1.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 46 TIFAGIFLLFSTMRSFALHRKNMGSFLNQICFSS 147
T+F L+ +M S+ ++RKNMG C +S
Sbjct: 381 TVFRLNVLMTKSMDSYVVYRKNMGRNFYVKCVAS 414
>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 496
Score = 24.2 bits (50), Expect = 2.9
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = -2
Query: 119 EPIFFLCKAKDLIVENN 69
E ++FLC K+ +++NN
Sbjct: 112 EQMYFLCNLKNCLIDNN 128
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 24.2 bits (50), Expect = 2.9
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -2
Query: 116 PIFFLCKAKDLIVENNRNIPAKIVRNSYIIINN*YL 9
P FF KA+D++ + PAK VR S I+N+ YL
Sbjct: 740 PEFFKSKARDILKKILVPDPAKRVRMS-AIMNHAYL 774
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 23.8 bits (49), Expect = 3.8
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +3
Query: 18 VIYNNVRVPYYFCR-YISVVLH 80
+I+NN+R+PY C YIS L+
Sbjct: 453 MIHNNLRLPYDSCMGYISNALN 474
>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 23.0 bits (47), Expect = 6.7
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +3
Query: 123 SQSNMF*FMQLAYPSSKNILYYFINFSVLLILGIFDDITLSVIFS 257
++ MF + LA +K + + +F + +LG+ DDIT ++ +S
Sbjct: 394 NKKTMFESVNLA--ETKKVDFTKTSFYLAQLLGMADDITYALAYS 436
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 23.0 bits (47), Expect = 6.7
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1
Query: 75 EQQKYTCKNSKELV 34
+Q KY C+N K+LV
Sbjct: 301 KQNKYRCENCKQLV 314
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 23.0 bits (47), Expect = 6.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 165 SSKNILYYFINFSVLLILGIFDDI 236
S+K +LY F N +L IL F +I
Sbjct: 857 SNKELLYDFFNNHILGILAEFSNI 880
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 23.0 bits (47), Expect = 6.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 110 FFLCKAKDLIVENNRNIPAKIVRN 39
FF LIV+NN+N+ + + +N
Sbjct: 176 FFPLTITTLIVKNNKNVVSNLPKN 199
>SPAC25B8.02 |||histone deacetylase complex subunit Sds3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 22.6 bits (46), Expect = 8.8
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -1
Query: 141 KTYLIEK*THIFSV*SKGSHSGEQQKYTCKNSKELV 34
+T+L+ + + V K + E+ +Y CK KE+V
Sbjct: 72 RTFLVNRAQEEYEVEMKAAK--EEYEYRCKTLKEMV 105
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 22.6 bits (46), Expect = 8.8
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -2
Query: 203 RKVNKIIQNILRTRVGQLHELKHI*L-RNEPIFFLCKAKDLIVENNRNIPAKIVRNS 36
RK N +Q+ + +L EL+H+ E + K +I + N N+ I NS
Sbjct: 374 RKENLFLQSERTHLLRELEELRHLATSAKEDFVKVEKLNKIIKDENENLKEYIRNNS 430
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,033,132
Number of Sequences: 5004
Number of extensions: 18583
Number of successful extensions: 52
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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