Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D01
         (261 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0192 + 13344558-13344942,13345038-13345591                       26   4.8  
09_06_0067 - 20645012-20645095,20645365-20645466,20645583-206458...    25   6.3  

>09_03_0192 + 13344558-13344942,13345038-13345591
          Length = 312

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 122 NEPIFFLCKAKDLI 81
           NE + FLCKAKDL+
Sbjct: 111 NEKVDFLCKAKDLM 124


>09_06_0067 -
           20645012-20645095,20645365-20645466,20645583-20645828,
           20646042-20646236,20646343-20646636,20646952-20647134,
           20647534-20647593,20647796-20648002,20648081-20648282,
           20648367-20648494,20648759-20648842,20648955-20649134,
           20649281-20649372,20649620-20649789,20650226-20650337,
           20650451-20650554,20651262-20651371
          Length = 850

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 90  GSHSGEQQKYTCKNSKELVHYY 25
           G  +GE  K   KN KE +H++
Sbjct: 86  GGSAGESTKQDTKNGKETIHWH 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,591,942
Number of Sequences: 37544
Number of extensions: 87798
Number of successful extensions: 204
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 14,793,348
effective HSP length: 65
effective length of database: 12,352,988
effective search space used: 259412748
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)