Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_D01
(261 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132859-5|CAB60490.2| 337|Caenorhabditis elegans Hypothetical ... 33 0.037
Z81039-8|CAB02779.2| 225|Caenorhabditis elegans Hypothetical pr... 29 0.60
U40029-5|AAA81125.2| 457|Caenorhabditis elegans Hypothetical pr... 27 2.4
U40029-4|ABD94116.1| 471|Caenorhabditis elegans Hypothetical pr... 27 2.4
AL132949-17|CAB70108.2| 338|Caenorhabditis elegans Hypothetical... 27 2.4
AL031630-18|CAA21002.1| 278|Caenorhabditis elegans Hypothetical... 27 2.4
AC006804-2|AAL32253.2| 372|Caenorhabditis elegans Hypothetical ... 27 2.4
AF022985-3|AAB69970.1| 355|Caenorhabditis elegans Hypothetical ... 26 3.2
Z93384-4|CAE17903.1| 308|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z75955-11|CAB00125.1| 412|Caenorhabditis elegans Hypothetical p... 26 4.2
AL021492-15|CAE18000.1| 308|Caenorhabditis elegans Hypothetical... 26 4.2
U40933-1|AAA81672.1| 699|Caenorhabditis elegans Bbs (bardet-bie... 25 5.6
Z81509-9|CAB04158.3| 503|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z81463-12|CAB03855.3| 503|Caenorhabditis elegans Hypothetical p... 25 7.4
Z78539-5|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z78415-6|CAH60758.1| 291|Caenorhabditis elegans Hypothetical pr... 25 7.4
U50312-1|AAA92318.1| 285|Caenorhabditis elegans Hypothetical pr... 25 7.4
AL023847-2|CAA19546.1| 359|Caenorhabditis elegans Hypothetical ... 25 7.4
Z92815-5|CAH10781.1| 313|Caenorhabditis elegans Hypothetical pr... 25 9.8
Z81547-6|CAB04462.2| 313|Caenorhabditis elegans Hypothetical pr... 25 9.8
CU457740-5|CAM36335.1| 361|Caenorhabditis elegans Hypothetical ... 25 9.8
AF100659-7|AAC68967.1| 688|Caenorhabditis elegans Hypothetical ... 25 9.8
AF077529-5|AAN60534.1| 756|Caenorhabditis elegans Hypothetical ... 25 9.8
AF077529-4|AAC26255.2| 783|Caenorhabditis elegans Hypothetical ... 25 9.8
AF039036-5|AAB94164.2| 351|Caenorhabditis elegans Hypothetical ... 25 9.8
>AL132859-5|CAB60490.2| 337|Caenorhabditis elegans Hypothetical
protein Y39C12A.5 protein.
Length = 337
Score = 32.7 bits (71), Expect = 0.037
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +3
Query: 21 IYNNVRVPYYFCRYISVVLHYEILCFTQKKYGFISQSNMF*FMQLAYPSSKNILYYFINF 200
I N+RV Y+ RY+S++ + I+C + F + N+ ++ + S +L F F
Sbjct: 201 ISENIRVFKYYTRYVSILTFFIIVCILSVIFSFSATPNVQRLLKFIFNLSYTLLTIFGPF 260
Query: 201 SVL 209
L
Sbjct: 261 FFL 263
>Z81039-8|CAB02779.2| 225|Caenorhabditis elegans Hypothetical
protein C25D7.10 protein.
Length = 225
Score = 28.7 bits (61), Expect = 0.60
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 76 STMRSFALHRKNMGSFLNQICFSSCNWPTRVLRIF 180
ST+ SF +H N F+N + SSC+WP + IF
Sbjct: 189 STIISFYIHFNN-AFFMNHL--SSCDWPVATVWIF 220
>U40029-5|AAA81125.2| 457|Caenorhabditis elegans Hypothetical
protein F10G7.5a protein.
Length = 457
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 28 IMYEFLTIFAGIFLLFSTMRSFALHRKNMGSFL 126
I +E+L I G F+L S +F +H+ ++ L
Sbjct: 406 IGFEYLFIVCGCFMLTSLFLTFIVHKTDLAQLL 438
Score = 26.2 bits (55), Expect = 3.2
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +1
Query: 19 LFIIMYEFLTIFAGIFLLFSTMRSFALH--RKNMGSFLNQICFSSCN-WPTRVLRIFCII 189
+FI+M F T+F I L+F +H +N+ ++I WP F ++
Sbjct: 198 VFIVMSIFFTVFQSIGLIFIGQPEGDIHVETENLIGTNSEIRVEQARVWPQLRTTTFLVL 257
Query: 190 LLTFLC 207
L+ C
Sbjct: 258 FLSLTC 263
>U40029-4|ABD94116.1| 471|Caenorhabditis elegans Hypothetical
protein F10G7.5b protein.
Length = 471
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 28 IMYEFLTIFAGIFLLFSTMRSFALHRKNMGSFL 126
I +E+L I G F+L S +F +H+ ++ L
Sbjct: 420 IGFEYLFIVCGCFMLTSLFLTFIVHKTDLAQLL 452
Score = 26.2 bits (55), Expect = 3.2
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +1
Query: 19 LFIIMYEFLTIFAGIFLLFSTMRSFALH--RKNMGSFLNQICFSSCN-WPTRVLRIFCII 189
+FI+M F T+F I L+F +H +N+ ++I WP F ++
Sbjct: 212 VFIVMSIFFTVFQSIGLIFIGQPEGDIHVETENLIGTNSEIRVEQARVWPQLRTTTFLVL 271
Query: 190 LLTFLC 207
L+ C
Sbjct: 272 FLSLTC 277
>AL132949-17|CAB70108.2| 338|Caenorhabditis elegans Hypothetical
protein Y53F4B.19 protein.
Length = 338
Score = 26.6 bits (56), Expect = 2.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 18 VIYNNVRVPYYFCRYISV 71
+ Y NVRVP FC Y+ V
Sbjct: 122 IFYPNVRVPKPFCEYLHV 139
>AL031630-18|CAA21002.1| 278|Caenorhabditis elegans Hypothetical
protein Y38H6C.21 protein.
Length = 278
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 144 FMQLAYPSSKNILYYFINFSVLLILGIFDDITLSVIFSI 260
F QL Y S I+YY +F L+L FD++ + ++
Sbjct: 60 FNQLYYISFSLIVYYDTSFLASLVLKEFDEMYAEAVINL 98
>AC006804-2|AAL32253.2| 372|Caenorhabditis elegans Hypothetical
protein Y53G8B.3 protein.
Length = 372
Score = 26.6 bits (56), Expect = 2.4
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = +3
Query: 27 NNVRVPYYFCRYISVVLHYEILCFT 101
+ R+P + RY+S+++H ++ FT
Sbjct: 187 STARLPQFVMRYLSLLIHCSLMLFT 211
>AF022985-3|AAB69970.1| 355|Caenorhabditis elegans Hypothetical
protein T15B7.11 protein.
Length = 355
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = +1
Query: 22 FIIMYEFLTIFAGIFLLFSTMRSFALHRKNMGSFLNQICFSSCNWPTRVLRIFCIILLTF 201
++ Y+ LTIF + F+T SF ++ F + F+ P +L ++ + + F
Sbjct: 293 YLNYYQNLTIFMNVLSFFNTTTSFIIYSSLSAKF--RRIFAQTFLPKNLLNMYMVTVAHF 350
>Z93384-4|CAE17903.1| 308|Caenorhabditis elegans Hypothetical
protein Y45F10D.15 protein.
Length = 308
Score = 25.8 bits (54), Expect = 4.2
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = +3
Query: 39 VPYYFCRYISVVLHYEILCFTQKKYGFISQSNMF*FMQLAYPSSKNILYYFINFSVLLIL 218
+P Y + + + CF +KK G + + F F L + +S +Y F LI
Sbjct: 173 LPVYVVIHFVANIKGSLKCFRRKKEGDENDFSYFYFYALQFFTSWAHVYQFCVVQTFLIP 232
Query: 219 GIF 227
IF
Sbjct: 233 AIF 235
>Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical
protein F57B1.9a protein.
Length = 357
Score = 25.8 bits (54), Expect = 4.2
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +3
Query: 15 SVIYNNVRVPYYFCRYISVVLHYEILCFTQKKYGFISQSNMF*FMQLAYPSSKNILYYFI 194
+++YNN R RY VLHYE+ C T + L P + +I+ I
Sbjct: 187 AMMYNNCRY-----RYSLNVLHYELYCQTSA------------VVNLPPPKAISIMEIVI 229
Query: 195 NFSV-LLILGIFDDITLSVI 251
F++ +I GI+ +T+ ++
Sbjct: 230 QFAIPCIIFGIYIALTIKIM 249
>Z75955-11|CAB00125.1| 412|Caenorhabditis elegans Hypothetical
protein R07B7.16 protein.
Length = 412
Score = 25.8 bits (54), Expect = 4.2
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = -2
Query: 200 KVNKIIQNILRTRVGQLHE--LKHI*LRNEPIFFLCKAKDLIVENNRNIPAKIVRNSYII 27
++ +I+ LR V ++ LK I +RN + L LI+EN RN AK + Y I
Sbjct: 295 QLQQILHAFLRINVDRVEYMILKAILMRNPSVPGLTLDDQLIIENERNQYAKALL-EYTI 353
Query: 26 INN 18
+++
Sbjct: 354 LHH 356
>AL021492-15|CAE18000.1| 308|Caenorhabditis elegans Hypothetical
protein Y45F10D.15 protein.
Length = 308
Score = 25.8 bits (54), Expect = 4.2
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = +3
Query: 39 VPYYFCRYISVVLHYEILCFTQKKYGFISQSNMF*FMQLAYPSSKNILYYFINFSVLLIL 218
+P Y + + + CF +KK G + + F F L + +S +Y F LI
Sbjct: 173 LPVYVVIHFVANIKGSLKCFRRKKEGDENDFSYFYFYALQFFTSWAHVYQFCVVQTFLIP 232
Query: 219 GIF 227
IF
Sbjct: 233 AIF 235
>U40933-1|AAA81672.1| 699|Caenorhabditis elegans Bbs (bardet-biedl
syndrome) proteinprotein 2 protein.
Length = 699
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -2
Query: 203 RKVNKIIQNILRTRVGQ 153
R++NKII+N R RVG+
Sbjct: 652 RRLNKIIENCSRLRVGE 668
>Z81509-9|CAB04158.3| 503|Caenorhabditis elegans Hypothetical
protein F21A3.7 protein.
Length = 503
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 10 KYQLFIIMYEFLTIFAGIFLLFSTMRSFALH 102
K+Q I E L++F + +LF+TM F H
Sbjct: 437 KWQTVIRRLEILSLFFYVSVLFTTMYLFFYH 467
>Z81463-12|CAB03855.3| 503|Caenorhabditis elegans Hypothetical
protein F21A3.7 protein.
Length = 503
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 10 KYQLFIIMYEFLTIFAGIFLLFSTMRSFALH 102
K+Q I E L++F + +LF+TM F H
Sbjct: 437 KWQTVIRRLEILSLFFYVSVLFTTMYLFFYH 467
>Z78539-5|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical
protein C31E10.8 protein.
Length = 1272
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 69 VVLHYEILCFTQKKYGFISQSNMF*FMQLAYPSSKNILY 185
V+ +I C T+ +G +N +QL + ++ N+LY
Sbjct: 853 VIYFDKITCMTESPFGIFLTTNHSTLIQLWHDTACNLLY 891
>Z78415-6|CAH60758.1| 291|Caenorhabditis elegans Hypothetical
protein C17G1.8 protein.
Length = 291
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +3
Query: 165 SSKNILYYFINFSVLLIL 218
S+K++LY +I F +LLIL
Sbjct: 73 SNKSLLYSYIGFVILLIL 90
>U50312-1|AAA92318.1| 285|Caenorhabditis elegans Hypothetical
protein B0222.1 protein.
Length = 285
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 136 CFSSCNWPTRVLRIFCIILLTFLC 207
C S+ +W T +L I I+L+ LC
Sbjct: 174 CCSNTSWVTIILIIVGIVLIIILC 197
>AL023847-2|CAA19546.1| 359|Caenorhabditis elegans Hypothetical
protein Y57A10C.4 protein.
Length = 359
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 22 FIIMYEFLTIFAGIFLLFSTMRSFALH 102
FII+Y+FL I + +LF+ + + L+
Sbjct: 172 FIIIYQFLAISISLGILFNILGLYVLN 198
>Z92815-5|CAH10781.1| 313|Caenorhabditis elegans Hypothetical
protein F53F8.2 protein.
Length = 313
Score = 24.6 bits (51), Expect = 9.8
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +1
Query: 19 LFIIMYEFLTIFAGIFLLFSTMRSFALHRKNMGSFLNQICFSSC 150
L I+++ + TIF F M LH KN+ S N + C
Sbjct: 5 LIILLFIYSTIFVVGFTGNLLMVLVTLHSKNLRSICNMLICVCC 48
>Z81547-6|CAB04462.2| 313|Caenorhabditis elegans Hypothetical
protein F53F8.2 protein.
Length = 313
Score = 24.6 bits (51), Expect = 9.8
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +1
Query: 19 LFIIMYEFLTIFAGIFLLFSTMRSFALHRKNMGSFLNQICFSSC 150
L I+++ + TIF F M LH KN+ S N + C
Sbjct: 5 LIILLFIYSTIFVVGFTGNLLMVLVTLHSKNLRSICNMLICVCC 48
>CU457740-5|CAM36335.1| 361|Caenorhabditis elegans Hypothetical
protein C50E10.5 protein.
Length = 361
Score = 24.6 bits (51), Expect = 9.8
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Frame = +1
Query: 22 FIIMYEF-LTIFAGIFLL---FSTMRSFALHRKNMGSFLNQICFS 144
F+++ EF L+IFAGIF++ F ++ A H N+ S + I S
Sbjct: 31 FLLLLEFILSIFAGIFIIVTVFIISKTRAFH-NNLTSLIIFILLS 74
>AF100659-7|AAC68967.1| 688|Caenorhabditis elegans Hypothetical
protein F58E2.4 protein.
Length = 688
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 94 ALHRKNMGSFLNQICFSSCNW 156
A+ R N G F +ICF+ W
Sbjct: 412 AMERHNQGVFGEEICFAHGRW 432
>AF077529-5|AAN60534.1| 756|Caenorhabditis elegans Hypothetical
protein C09E8.1b protein.
Length = 756
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 4 RGKYQLFIIMYEFLTIFAGIFLLFSTMR 87
RG Y+ I++ ++ T F G F+L +T R
Sbjct: 266 RGSYRTSILIVDYSTAFTG-FVLLATSR 292
>AF077529-4|AAC26255.2| 783|Caenorhabditis elegans Hypothetical
protein C09E8.1a protein.
Length = 783
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 4 RGKYQLFIIMYEFLTIFAGIFLLFSTMR 87
RG Y+ I++ ++ T F G F+L +T R
Sbjct: 266 RGSYRTSILIVDYSTAFTG-FVLLATSR 292
>AF039036-5|AAB94164.2| 351|Caenorhabditis elegans Hypothetical
protein E03D2.4 protein.
Length = 351
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 198 FSVLLILGIFDDITLSV 248
F V+LIL +FD ++LSV
Sbjct: 71 FQVMLILSVFDILSLSV 87
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,538,658
Number of Sequences: 27780
Number of extensions: 97554
Number of successful extensions: 297
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 12,740,198
effective HSP length: 65
effective length of database: 10,934,498
effective search space used: 229624458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -