Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C24
         (107 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9Y171 Cluster: CG6404-PA, isoform A; n=2; Sophophora|R...    33   0.96 
UniRef50_Q174X3 Cluster: Cytochrome oxidase biogenesis protein; ...    32   2.9  

>UniRef50_Q9Y171 Cluster: CG6404-PA, isoform A; n=2; Sophophora|Rep:
           CG6404-PA, isoform A - Drosophila melanogaster (Fruit
           fly)
          Length = 441

 Score = 33.5 bits (73), Expect = 0.96
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -2

Query: 100 FSSVPLGGWXEVGLVPNCLQ 41
           F+S+ LGGW  VG+V NCL+
Sbjct: 123 FASIGLGGWSPVGMVQNCLE 142


>UniRef50_Q174X3 Cluster: Cytochrome oxidase biogenesis protein;
           n=3; Endopterygota|Rep: Cytochrome oxidase biogenesis
           protein - Aedes aegypti (Yellowfever mosquito)
          Length = 422

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -2

Query: 100 FSSVPLGGWXEVGLVPNCLQ 41
           F+S+ LGGW  VG+V NC++
Sbjct: 111 FASLGLGGWTPVGIVQNCME 130


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,586,055
Number of Sequences: 1657284
Number of extensions: 1352932
Number of successful extensions: 4611
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4611
length of database: 575,637,011
effective HSP length: 16
effective length of database: 549,120,467
effective search space used: 10433288873
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)