Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C24
         (107 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   0.38 
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    19   6.2  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    18   8.2  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    18   8.2  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           18   8.2  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 0.38
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 29   DPPELQAIRHEAHLXPPSKRN*TKI 103
            +PP ++A+  E    PPS  + T +
Sbjct: 1781 EPPSVEAVEEEREEAPPSVHSSTVV 1805


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 18.6 bits (36), Expect = 6.2
 Identities = 4/7 (57%), Positives = 6/7 (85%)
 Frame = +3

Query: 27  WIPRSCR 47
           W+P SC+
Sbjct: 493 WVPHSCK 499


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 18.2 bits (35), Expect = 8.2
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -2

Query: 91  VPLGGWXEVG 62
           V +GGW E G
Sbjct: 99  VAVGGWAEGG 108


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 18.2 bits (35), Expect = 8.2
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +1

Query: 1   CGRPL*QLXGSPG 39
           C +PL Q+   PG
Sbjct: 273 CAKPLTQIRNIPG 285


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 18.2 bits (35), Expect = 8.2
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +1

Query: 1   CGRPL*QLXGSPG 39
           C +PL Q+   PG
Sbjct: 273 CAKPLTQIRNIPG 285


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,512
Number of Sequences: 336
Number of extensions: 280
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 16
effective length of database: 117,209
effective search space used:  2226971
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)