Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C24
         (107 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0752 - 5583757-5584092                                           27   2.8  
02_05_1229 - 35092135-35092252,35092662-35092764,35093014-350933...    26   3.8  
06_01_0945 - 7278911-7279417                                           25   8.7  
03_06_0499 - 34354040-34354528                                         25   8.7  

>02_01_0752 - 5583757-5584092
          Length = 111

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 81 EGGXRWASCRIACSSGG 31
          EGG  W  C + C  GG
Sbjct: 37 EGGSYWGRCMLVCGGGG 53


>02_05_1229 -
           35092135-35092252,35092662-35092764,35093014-35093315,
           35093849-35094171
          Length = 281

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -1

Query: 92  SSAWRVAXGGPRAELPAAPGDPXSC*SGRP 3
           S A   A GG RAE P A   P +  SG P
Sbjct: 77  SPAAAAAAGGKRAEGPTATTSPGTVASGHP 106


>06_01_0945 - 7278911-7279417
          Length = 168

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 84 LEGGXRWASCRIACSSG 34
          LEGG RW S ++A S+G
Sbjct: 25 LEGGRRWWSWQLAVSAG 41


>03_06_0499 - 34354040-34354528
          Length = 162

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +3

Query: 21  TXWIPRSCRQFGTRPTSCHP 80
           T  IP  C+    RP  CHP
Sbjct: 107 TKSIPPQCQCMDARPAGCHP 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,178,193
Number of Sequences: 37544
Number of extensions: 50876
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 14,793,348
effective HSP length: 16
effective length of database: 14,192,644
effective search space used: 269660236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)